Strain Fitness in Shewanella oneidensis MR-1 around SO0367

Experiment: hydrous ferric oxide electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0366 and SO0367 are separated by 304 nucleotidesSO0367 and SO0368 are separated by 439 nucleotides SO0366: SO0366 - hypothetical protein (NCBI ptt file), at 377,127 to 377,945 SO0366 SO0367: SO0367 - conserved hypothetical protein (NCBI ptt file), at 378,250 to 379,365 SO0367 SO0368: SO0368 - helicase (NCBI ptt file), at 379,805 to 382,753 SO0368 Position (kb) 378 379 380Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 377.444 kb on + strand, within SO0366at 377.452 kb on - strand, within SO0366at 377.467 kb on + strand, within SO0366at 377.504 kb on + strand, within SO0366at 377.689 kb on - strand, within SO0366at 377.733 kb on + strand, within SO0366at 377.830 kb on + strand, within SO0366at 377.882 kb on + strandat 377.894 kb on + strandat 377.946 kb on + strandat 377.949 kb on - strandat 377.954 kb on - strandat 377.956 kb on + strandat 377.958 kb on + strandat 377.958 kb on + strandat 377.960 kb on + strandat 378.038 kb on - strandat 378.038 kb on - strandat 378.047 kb on + strandat 378.047 kb on + strandat 378.047 kb on + strandat 378.055 kb on - strandat 378.142 kb on - strandat 378.304 kb on + strandat 378.384 kb on + strand, within SO0367at 378.384 kb on + strand, within SO0367at 378.417 kb on + strand, within SO0367at 378.464 kb on - strand, within SO0367at 378.482 kb on - strand, within SO0367at 378.530 kb on - strand, within SO0367at 378.530 kb on - strand, within SO0367at 378.554 kb on + strand, within SO0367at 378.589 kb on + strand, within SO0367at 378.606 kb on + strand, within SO0367at 378.614 kb on - strand, within SO0367at 378.647 kb on - strand, within SO0367at 378.649 kb on - strand, within SO0367at 378.649 kb on - strand, within SO0367at 378.649 kb on - strand, within SO0367at 378.651 kb on + strand, within SO0367at 378.659 kb on - strand, within SO0367at 378.689 kb on + strand, within SO0367at 378.699 kb on + strand, within SO0367at 378.699 kb on + strand, within SO0367at 378.707 kb on - strand, within SO0367at 378.852 kb on + strand, within SO0367at 378.887 kb on + strand, within SO0367at 378.974 kb on + strand, within SO0367at 378.987 kb on + strand, within SO0367at 378.994 kb on + strand, within SO0367at 379.107 kb on + strand, within SO0367at 379.107 kb on + strand, within SO0367at 379.107 kb on + strand, within SO0367at 379.115 kb on - strand, within SO0367at 379.176 kb on - strand, within SO0367at 379.367 kb on + strandat 379.370 kb on - strandat 379.392 kb on + strandat 379.463 kb on - strandat 379.463 kb on - strandat 379.463 kb on - strandat 379.469 kb on - strandat 379.480 kb on - strandat 379.573 kb on + strandat 379.574 kb on - strandat 379.574 kb on - strandat 379.585 kb on - strandat 379.674 kb on + strandat 379.674 kb on + strandat 379.674 kb on + strandat 379.682 kb on - strandat 379.682 kb on - strandat 379.682 kb on - strandat 379.683 kb on - strandat 379.683 kb on - strandat 379.697 kb on - strandat 379.765 kb on - strandat 379.765 kb on - strandat 379.817 kb on - strandat 379.822 kb on + strandat 379.868 kb on + strandat 379.876 kb on - strandat 379.876 kb on - strandat 379.876 kb on - strandat 379.960 kb on + strandat 379.960 kb on + strandat 379.968 kb on - strandat 379.968 kb on - strandat 380.021 kb on + strandat 380.094 kb on + strandat 380.131 kb on - strand, within SO0368at 380.137 kb on - strand, within SO0368at 380.170 kb on + strand, within SO0368at 380.294 kb on + strand, within SO0368at 380.302 kb on - strand, within SO0368at 380.335 kb on - strand, within SO0368at 380.348 kb on - strand, within SO0368at 380.352 kb on + strand, within SO0368at 380.360 kb on - strand, within SO0368

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Per-strain Table

Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor
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377,444 + SO0366 0.39 -0.3
377,452 - SO0366 0.40 +1.2
377,467 + SO0366 0.42 -1.2
377,504 + SO0366 0.46 -2.0
377,689 - SO0366 0.69 +0.7
377,733 + SO0366 0.74 +1.4
377,830 + SO0366 0.86 -1.7
377,882 + +1.3
377,894 + -1.2
377,946 + +3.8
377,949 - -1.0
377,954 - +3.6
377,956 + +0.2
377,958 + -3.0
377,958 + -0.1
377,960 + +0.3
378,038 - +1.2
378,038 - +1.5
378,047 + -0.5
378,047 + +0.4
378,047 + +0.2
378,055 - +0.2
378,142 - -0.3
378,304 + +1.2
378,384 + SO0367 0.12 -4.0
378,384 + SO0367 0.12 -1.8
378,417 + SO0367 0.15 -2.3
378,464 - SO0367 0.19 -3.0
378,482 - SO0367 0.21 -2.1
378,530 - SO0367 0.25 +1.7
378,530 - SO0367 0.25 -1.2
378,554 + SO0367 0.27 -2.4
378,589 + SO0367 0.30 -0.9
378,606 + SO0367 0.32 -2.7
378,614 - SO0367 0.33 +0.5
378,647 - SO0367 0.36 -0.1
378,649 - SO0367 0.36 -0.1
378,649 - SO0367 0.36 +1.7
378,649 - SO0367 0.36 -2.5
378,651 + SO0367 0.36 -0.9
378,659 - SO0367 0.37 +0.1
378,689 + SO0367 0.39 -0.7
378,699 + SO0367 0.40 +0.5
378,699 + SO0367 0.40 +0.9
378,707 - SO0367 0.41 -0.1
378,852 + SO0367 0.54 +1.6
378,887 + SO0367 0.57 +0.3
378,974 + SO0367 0.65 +0.2
378,987 + SO0367 0.66 +0.4
378,994 + SO0367 0.67 -0.8
379,107 + SO0367 0.77 -0.3
379,107 + SO0367 0.77 -0.2
379,107 + SO0367 0.77 -0.5
379,115 - SO0367 0.78 -0.4
379,176 - SO0367 0.83 -0.1
379,367 + -1.0
379,370 - -0.5
379,392 + -1.7
379,463 - -1.6
379,463 - +2.5
379,463 - -2.3
379,469 - +0.4
379,480 - +0.9
379,573 + -2.5
379,574 - -1.1
379,574 - -0.0
379,585 - +0.5
379,674 + -0.7
379,674 + -2.1
379,674 + -0.3
379,682 - +1.3
379,682 - -0.2
379,682 - +1.4
379,683 - +0.2
379,683 - +0.7
379,697 - +0.9
379,765 - -0.7
379,765 - +0.5
379,817 - +1.5
379,822 + -1.4
379,868 + -0.3
379,876 - -0.5
379,876 - -2.3
379,876 - +1.3
379,960 + +0.5
379,960 + +1.4
379,968 - +0.6
379,968 - -0.1
380,021 + -0.8
380,094 + +0.5
380,131 - SO0368 0.11 -0.3
380,137 - SO0368 0.11 +0.3
380,170 + SO0368 0.12 +0.6
380,294 + SO0368 0.17 +3.3
380,302 - SO0368 0.17 -0.6
380,335 - SO0368 0.18 -0.0
380,348 - SO0368 0.18 -0.5
380,352 + SO0368 0.19 -2.1
380,360 - SO0368 0.19 -1.4

Or see this region's nucleotide sequence