Strain Fitness in Shewanella oneidensis MR-1 around SO0355

Experiment: hydrous ferric oxide electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0354 and SO0355 are separated by 170 nucleotidesSO0355 and SO0356 are separated by 474 nucleotides SO0354: SO0354 - sodium/calcium exchanger (NCBI ptt file), at 361,225 to 362,175 SO0354 SO0355: SO0355 - AMP-binding protein (NCBI ptt file), at 362,346 to 364,010 SO0355 SO0356: SO0356 - ISSod4, transposase (NCBI ptt file), at 364,485 to 365,687 SO0356 Position (kb) 362 363 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 361.353 kb on + strand, within SO0354at 361.353 kb on + strand, within SO0354at 361.385 kb on - strand, within SO0354at 361.385 kb on - strand, within SO0354at 361.385 kb on - strand, within SO0354at 361.409 kb on + strand, within SO0354at 361.497 kb on - strand, within SO0354at 361.497 kb on - strand, within SO0354at 361.666 kb on + strand, within SO0354at 361.669 kb on - strand, within SO0354at 361.758 kb on - strand, within SO0354at 361.829 kb on + strand, within SO0354at 361.837 kb on - strand, within SO0354at 361.837 kb on - strand, within SO0354at 361.927 kb on + strand, within SO0354at 361.935 kb on - strand, within SO0354at 361.981 kb on + strand, within SO0354at 361.995 kb on - strand, within SO0354at 362.049 kb on + strand, within SO0354at 362.064 kb on - strand, within SO0354at 362.086 kb on - strandat 362.096 kb on - strandat 362.110 kb on + strandat 362.184 kb on + strandat 362.192 kb on - strandat 362.232 kb on - strandat 362.243 kb on + strandat 362.295 kb on + strandat 362.303 kb on - strandat 362.303 kb on - strandat 362.303 kb on - strandat 362.394 kb on + strandat 362.394 kb on - strandat 362.394 kb on - strandat 362.552 kb on - strand, within SO0355at 362.585 kb on + strand, within SO0355at 362.612 kb on + strand, within SO0355at 362.636 kb on + strand, within SO0355at 362.712 kb on + strand, within SO0355at 362.712 kb on + strand, within SO0355at 362.728 kb on + strand, within SO0355at 362.798 kb on - strand, within SO0355at 362.878 kb on - strand, within SO0355at 362.906 kb on - strand, within SO0355at 362.906 kb on - strand, within SO0355at 362.931 kb on - strand, within SO0355at 362.932 kb on + strand, within SO0355at 362.933 kb on + strand, within SO0355at 362.935 kb on - strand, within SO0355at 362.940 kb on - strand, within SO0355at 362.940 kb on - strand, within SO0355at 363.007 kb on + strand, within SO0355at 363.024 kb on + strand, within SO0355at 363.037 kb on - strand, within SO0355at 363.037 kb on - strand, within SO0355at 363.037 kb on - strand, within SO0355at 363.077 kb on + strand, within SO0355at 363.115 kb on - strand, within SO0355at 363.116 kb on - strand, within SO0355at 363.116 kb on - strand, within SO0355at 363.116 kb on - strand, within SO0355at 363.144 kb on + strand, within SO0355at 363.218 kb on + strand, within SO0355at 363.220 kb on + strand, within SO0355at 363.228 kb on + strand, within SO0355at 363.262 kb on - strand, within SO0355at 363.275 kb on + strand, within SO0355at 363.283 kb on - strand, within SO0355at 363.283 kb on - strand, within SO0355at 363.353 kb on + strand, within SO0355at 363.446 kb on - strand, within SO0355at 363.454 kb on - strand, within SO0355at 363.466 kb on + strand, within SO0355at 363.466 kb on + strand, within SO0355at 363.466 kb on + strand, within SO0355at 363.474 kb on - strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.493 kb on + strand, within SO0355at 363.501 kb on - strand, within SO0355at 363.501 kb on - strand, within SO0355at 363.501 kb on - strand, within SO0355at 363.520 kb on + strand, within SO0355at 363.520 kb on + strand, within SO0355at 363.523 kb on - strand, within SO0355at 363.699 kb on - strand, within SO0355at 363.836 kb on + strand, within SO0355at 363.859 kb on + strandat 363.859 kb on + strandat 363.912 kb on + strandat 363.912 kb on + strandat 363.950 kb on - strandat 364.018 kb on + strandat 364.050 kb on + strandat 364.052 kb on - strandat 364.080 kb on + strandat 364.113 kb on + strandat 364.113 kb on + strandat 364.113 kb on + strandat 364.113 kb on + strandat 364.121 kb on - strandat 364.131 kb on - strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.161 kb on + strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.169 kb on - strandat 364.171 kb on + strandat 364.179 kb on - strandat 364.179 kb on - strandat 364.179 kb on - strandat 364.206 kb on + strandat 364.214 kb on - strandat 364.219 kb on + strandat 364.219 kb on + strandat 364.219 kb on + strandat 364.219 kb on + strandat 364.219 kb on + strandat 364.219 kb on - strandat 364.227 kb on - strandat 364.227 kb on - strandat 364.282 kb on - strandat 364.338 kb on - strandat 364.344 kb on - strandat 364.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor
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361,353 + SO0354 0.13 -1.6
361,353 + SO0354 0.13 +1.1
361,385 - SO0354 0.17 -2.7
361,385 - SO0354 0.17 +0.5
361,385 - SO0354 0.17 -0.2
361,409 + SO0354 0.19 +1.7
361,497 - SO0354 0.29 -3.5
361,497 - SO0354 0.29 +0.8
361,666 + SO0354 0.46 -0.3
361,669 - SO0354 0.47 +0.5
361,758 - SO0354 0.56 +1.3
361,829 + SO0354 0.64 +1.8
361,837 - SO0354 0.64 -0.3
361,837 - SO0354 0.64 +0.5
361,927 + SO0354 0.74 +1.1
361,935 - SO0354 0.75 -1.8
361,981 + SO0354 0.79 -2.1
361,995 - SO0354 0.81 -0.1
362,049 + SO0354 0.87 +2.4
362,064 - SO0354 0.88 +1.4
362,086 - +0.1
362,096 - +0.9
362,110 + -1.9
362,184 + -1.4
362,192 - -0.2
362,232 - -0.0
362,243 + -0.9
362,295 + +0.3
362,303 - +0.7
362,303 - -2.7
362,303 - +1.3
362,394 + -2.8
362,394 - -2.0
362,394 - -2.5
362,552 - SO0355 0.12 +1.0
362,585 + SO0355 0.14 +2.1
362,612 + SO0355 0.16 +0.0
362,636 + SO0355 0.17 -2.4
362,712 + SO0355 0.22 +1.5
362,712 + SO0355 0.22 -2.1
362,728 + SO0355 0.23 +0.6
362,798 - SO0355 0.27 -0.7
362,878 - SO0355 0.32 +0.8
362,906 - SO0355 0.34 -0.5
362,906 - SO0355 0.34 -1.5
362,931 - SO0355 0.35 -0.9
362,932 + SO0355 0.35 -0.1
362,933 + SO0355 0.35 +0.5
362,935 - SO0355 0.35 -0.1
362,940 - SO0355 0.36 -0.3
362,940 - SO0355 0.36 -0.8
363,007 + SO0355 0.40 +0.1
363,024 + SO0355 0.41 +0.9
363,037 - SO0355 0.42 +0.6
363,037 - SO0355 0.42 -0.5
363,037 - SO0355 0.42 -1.1
363,077 + SO0355 0.44 -3.5
363,115 - SO0355 0.46 +0.3
363,116 - SO0355 0.46 +0.6
363,116 - SO0355 0.46 -2.0
363,116 - SO0355 0.46 -1.3
363,144 + SO0355 0.48 -1.2
363,218 + SO0355 0.52 -0.9
363,220 + SO0355 0.52 +2.0
363,228 + SO0355 0.53 +0.1
363,262 - SO0355 0.55 +2.1
363,275 + SO0355 0.56 -0.3
363,283 - SO0355 0.56 +0.7
363,283 - SO0355 0.56 +0.2
363,353 + SO0355 0.60 -1.6
363,446 - SO0355 0.66 -1.3
363,454 - SO0355 0.67 +1.2
363,466 + SO0355 0.67 -0.8
363,466 + SO0355 0.67 +0.2
363,466 + SO0355 0.67 -0.6
363,474 - SO0355 0.68 +0.7
363,493 + SO0355 0.69 -0.2
363,493 + SO0355 0.69 +2.5
363,493 + SO0355 0.69 -0.7
363,493 + SO0355 0.69 +0.5
363,493 + SO0355 0.69 -1.8
363,501 - SO0355 0.69 -0.4
363,501 - SO0355 0.69 -0.4
363,501 - SO0355 0.69 -1.1
363,520 + SO0355 0.71 -0.3
363,520 + SO0355 0.71 -0.3
363,523 - SO0355 0.71 +0.9
363,699 - SO0355 0.81 -1.8
363,836 + SO0355 0.89 -2.2
363,859 + -0.5
363,859 + -0.7
363,912 + -0.3
363,912 + -1.5
363,950 - -2.5
364,018 + -2.2
364,050 + +1.0
364,052 - +0.4
364,080 + -0.7
364,113 + +0.9
364,113 + +1.5
364,113 + +2.1
364,113 + -1.3
364,121 - -1.0
364,131 - -2.1
364,161 + +2.7
364,161 + +0.3
364,161 + -3.0
364,161 + +2.4
364,161 + -0.8
364,161 + +0.6
364,161 + +0.7
364,169 - +1.3
364,169 - +1.6
364,169 - -1.2
364,169 - -1.9
364,169 - +0.4
364,169 - +0.5
364,169 - -2.3
364,169 - +0.4
364,171 + +1.6
364,179 - +0.3
364,179 - +0.2
364,179 - -2.9
364,206 + +0.2
364,214 - -0.8
364,219 + -0.0
364,219 + -1.0
364,219 + -1.2
364,219 + -1.2
364,219 + -1.5
364,219 - +0.5
364,227 - +1.3
364,227 - +0.5
364,282 - -1.3
364,338 - -1.9
364,344 - -0.5
364,389 + -0.8

Or see this region's nucleotide sequence