Strain Fitness in Shewanella oneidensis MR-1 around SO0282

Experiment: hydrous ferric oxide electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0281 and SO0282 overlap by 13 nucleotidesSO0282 and SO0283 overlap by 4 nucleotidesSO0283 and SO0284 overlap by 1 nucleotides SO0281: SO0281 - type IV pilus biogenesis protein PilM (NCBI ptt file), at 288,762 to 289,841 SO0281 SO0282: SO0282 - type IV pilus biogenesis protein PilN (NCBI ptt file), at 289,829 to 290,413 SO0282 SO0283: SO0283 - type IV pilus biogenesis protein PilO (NCBI ptt file), at 290,410 to 291,030 SO0283 SO0284: SO0284 - type IV pilus biogenesis protein PilP (NCBI ptt file), at 291,030 to 291,545 SO0284 Position (kb) 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 288.845 kb on + strandat 288.845 kb on + strandat 288.845 kb on + strandat 288.952 kb on + strand, within SO0281at 288.960 kb on - strand, within SO0281at 289.042 kb on - strand, within SO0281at 289.103 kb on + strand, within SO0281at 289.190 kb on + strand, within SO0281at 289.190 kb on + strand, within SO0281at 289.193 kb on - strand, within SO0281at 289.193 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.198 kb on - strand, within SO0281at 289.203 kb on - strand, within SO0281at 289.223 kb on - strand, within SO0281at 289.272 kb on + strand, within SO0281at 289.279 kb on + strand, within SO0281at 289.280 kb on - strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.284 kb on + strand, within SO0281at 289.311 kb on - strand, within SO0281at 289.332 kb on + strand, within SO0281at 289.338 kb on - strand, within SO0281at 289.392 kb on + strand, within SO0281at 289.410 kb on + strand, within SO0281at 289.410 kb on + strand, within SO0281at 289.422 kb on + strand, within SO0281at 289.428 kb on + strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.436 kb on - strand, within SO0281at 289.454 kb on + strand, within SO0281at 289.550 kb on - strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.654 kb on + strand, within SO0281at 289.662 kb on + strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.662 kb on - strand, within SO0281at 289.669 kb on - strand, within SO0281at 289.669 kb on - strand, within SO0281at 289.701 kb on + strand, within SO0281at 289.701 kb on + strand, within SO0281at 289.708 kb on + strand, within SO0281at 289.708 kb on + strand, within SO0281at 289.731 kb on + strand, within SO0281at 289.733 kb on + strand, within SO0281at 289.733 kb on - strand, within SO0281at 289.749 kb on - strandat 289.787 kb on + strandat 289.791 kb on - strandat 289.797 kb on + strandat 289.804 kb on + strandat 289.805 kb on - strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.809 kb on + strandat 289.812 kb on - strandat 289.812 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.817 kb on - strandat 289.832 kb on - strandat 289.836 kb on + strandat 289.836 kb on + strandat 289.837 kb on + strandat 289.864 kb on + strandat 289.884 kb on - strandat 289.928 kb on - strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.938 kb on + strand, within SO0282at 289.941 kb on - strand, within SO0282at 289.946 kb on - strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.968 kb on + strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 289.976 kb on - strand, within SO0282at 290.002 kb on + strand, within SO0282at 290.002 kb on + strand, within SO0282at 290.135 kb on + strand, within SO0282at 290.156 kb on - strand, within SO0282at 290.163 kb on + strand, within SO0282at 290.167 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.171 kb on - strand, within SO0282at 290.218 kb on + strand, within SO0282at 290.218 kb on + strand, within SO0282at 290.238 kb on + strand, within SO0282at 290.238 kb on - strand, within SO0282at 290.250 kb on + strand, within SO0282at 290.256 kb on + strand, within SO0282at 290.258 kb on + strand, within SO0282at 290.258 kb on - strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on + strand, within SO0282at 290.265 kb on - strand, within SO0282at 290.266 kb on - strand, within SO0282at 290.266 kb on - strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.272 kb on + strand, within SO0282at 290.273 kb on - strand, within SO0282at 290.275 kb on - strand, within SO0282at 290.282 kb on + strand, within SO0282at 290.282 kb on - strand, within SO0282at 290.291 kb on + strand, within SO0282at 290.303 kb on - strand, within SO0282at 290.318 kb on + strand, within SO0282at 290.327 kb on - strand, within SO0282at 290.327 kb on - strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.343 kb on + strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.351 kb on - strand, within SO0282at 290.355 kb on + strandat 290.378 kb on - strandat 290.378 kb on - strandat 290.420 kb on + strandat 290.428 kb on - strandat 290.428 kb on - strandat 290.428 kb on - strandat 290.474 kb on - strand, within SO0283at 290.533 kb on + strand, within SO0283at 290.536 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.577 kb on - strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.584 kb on - strand, within SO0283at 290.597 kb on - strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.637 kb on + strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.639 kb on - strand, within SO0283at 290.642 kb on + strand, within SO0283at 290.650 kb on + strand, within SO0283at 290.731 kb on + strand, within SO0283at 290.733 kb on - strand, within SO0283at 290.760 kb on - strand, within SO0283at 290.766 kb on + strand, within SO0283at 290.766 kb on - strand, within SO0283at 290.825 kb on - strand, within SO0283at 290.846 kb on + strand, within SO0283at 290.860 kb on + strand, within SO0283at 290.861 kb on + strand, within SO0283at 290.868 kb on + strand, within SO0283at 290.869 kb on - strand, within SO0283at 290.876 kb on - strand, within SO0283at 290.894 kb on + strand, within SO0283at 290.932 kb on - strand, within SO0283at 290.958 kb on - strand, within SO0283at 290.967 kb on + strand, within SO0283at 290.967 kb on + strand, within SO0283at 290.975 kb on - strandat 290.975 kb on - strandat 290.975 kb on - strandat 290.975 kb on - strandat 290.987 kb on + strandat 290.987 kb on + strandat 290.995 kb on - strandat 290.995 kb on - strandat 290.995 kb on - strandat 291.000 kb on - strandat 291.037 kb on + strandat 291.043 kb on - strandat 291.043 kb on - strandat 291.059 kb on - strandat 291.093 kb on + strand, within SO0284at 291.094 kb on + strand, within SO0284at 291.099 kb on - strand, within SO0284at 291.101 kb on - strand, within SO0284at 291.117 kb on + strand, within SO0284at 291.135 kb on + strand, within SO0284at 291.135 kb on + strand, within SO0284at 291.137 kb on - strand, within SO0284at 291.148 kb on + strand, within SO0284at 291.161 kb on + strand, within SO0284at 291.173 kb on + strand, within SO0284at 291.192 kb on + strand, within SO0284at 291.196 kb on - strand, within SO0284at 291.205 kb on + strand, within SO0284at 291.205 kb on + strand, within SO0284at 291.213 kb on - strand, within SO0284at 291.263 kb on - strand, within SO0284at 291.263 kb on - strand, within SO0284at 291.354 kb on + strand, within SO0284at 291.362 kb on - strand, within SO0284at 291.362 kb on - strand, within SO0284at 291.389 kb on - strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.408 kb on - strand, within SO0284at 291.408 kb on - strand, within SO0284at 291.413 kb on - strand, within SO0284at 291.413 kb on - strand, within SO0284

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Per-strain Table

Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor
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288,845 + -1.1
288,845 + +0.5
288,845 + +0.5
288,952 + SO0281 0.18 -0.3
288,960 - SO0281 0.18 +0.3
289,042 - SO0281 0.26 -1.6
289,103 + SO0281 0.32 +1.1
289,190 + SO0281 0.40 +1.4
289,190 + SO0281 0.40 -0.2
289,193 - SO0281 0.40 +0.6
289,193 - SO0281 0.40 +1.1
289,198 - SO0281 0.40 +0.5
289,198 - SO0281 0.40 -2.6
289,198 - SO0281 0.40 -2.1
289,198 - SO0281 0.40 +1.4
289,198 - SO0281 0.40 +0.7
289,203 - SO0281 0.41 -1.7
289,223 - SO0281 0.43 +0.2
289,272 + SO0281 0.47 -0.4
289,279 + SO0281 0.48 -0.5
289,280 - SO0281 0.48 -0.6
289,284 + SO0281 0.48 -0.7
289,284 + SO0281 0.48 +0.9
289,284 + SO0281 0.48 -0.9
289,311 - SO0281 0.51 +0.1
289,332 + SO0281 0.53 -2.3
289,338 - SO0281 0.53 -1.2
289,392 + SO0281 0.58 +0.7
289,410 + SO0281 0.60 +0.5
289,410 + SO0281 0.60 -1.6
289,422 + SO0281 0.61 +1.6
289,428 + SO0281 0.62 -2.0
289,436 - SO0281 0.62 -2.8
289,436 - SO0281 0.62 -0.1
289,436 - SO0281 0.62 +1.2
289,454 + SO0281 0.64 +1.5
289,550 - SO0281 0.73 +1.7
289,654 + SO0281 0.83 +2.2
289,654 + SO0281 0.83 -2.1
289,654 + SO0281 0.83 -3.0
289,654 + SO0281 0.83 -0.1
289,662 + SO0281 0.83 +1.2
289,662 - SO0281 0.83 +0.7
289,662 - SO0281 0.83 -0.1
289,662 - SO0281 0.83 +2.9
289,662 - SO0281 0.83 -0.4
289,669 - SO0281 0.84 +0.5
289,669 - SO0281 0.84 +0.7
289,701 + SO0281 0.87 -0.6
289,701 + SO0281 0.87 +2.3
289,708 + SO0281 0.88 +0.0
289,708 + SO0281 0.88 +0.4
289,731 + SO0281 0.90 -1.9
289,733 + SO0281 0.90 +2.7
289,733 - SO0281 0.90 -0.2
289,749 - -0.6
289,787 + +0.5
289,791 - +0.1
289,797 + -1.4
289,804 + -0.7
289,805 - +0.7
289,809 + +1.0
289,809 + +0.7
289,809 + +0.7
289,809 + -0.4
289,812 - -1.5
289,812 - +0.9
289,817 - -0.6
289,817 - -0.1
289,817 - +0.2
289,817 - +0.3
289,832 - -0.4
289,836 + +2.3
289,836 + -0.1
289,837 + +0.8
289,864 + -0.4
289,884 - -1.8
289,928 - SO0282 0.17 -2.9
289,938 + SO0282 0.19 -0.3
289,938 + SO0282 0.19 -0.1
289,938 + SO0282 0.19 +0.9
289,938 + SO0282 0.19 -0.5
289,941 - SO0282 0.19 -1.1
289,946 - SO0282 0.20 -0.1
289,968 + SO0282 0.24 -0.3
289,968 + SO0282 0.24 -1.0
289,968 + SO0282 0.24 -0.9
289,968 + SO0282 0.24 -1.0
289,976 - SO0282 0.25 -0.9
289,976 - SO0282 0.25 +0.2
289,976 - SO0282 0.25 -0.4
289,976 - SO0282 0.25 -1.3
289,976 - SO0282 0.25 +1.1
289,976 - SO0282 0.25 -0.3
290,002 + SO0282 0.30 -0.9
290,002 + SO0282 0.30 -1.6
290,135 + SO0282 0.52 -1.9
290,156 - SO0282 0.56 +1.7
290,163 + SO0282 0.57 -0.9
290,167 - SO0282 0.58 -0.9
290,171 - SO0282 0.58 +0.2
290,171 - SO0282 0.58 +1.8
290,171 - SO0282 0.58 +1.4
290,171 - SO0282 0.58 +1.5
290,218 + SO0282 0.66 -0.5
290,218 + SO0282 0.66 +0.2
290,238 + SO0282 0.70 +0.1
290,238 - SO0282 0.70 -1.5
290,250 + SO0282 0.72 +0.5
290,256 + SO0282 0.73 -0.8
290,258 + SO0282 0.73 -0.4
290,258 - SO0282 0.73 -0.6
290,265 + SO0282 0.75 -0.4
290,265 + SO0282 0.75 +0.5
290,265 + SO0282 0.75 +0.1
290,265 + SO0282 0.75 -1.0
290,265 + SO0282 0.75 +0.1
290,265 - SO0282 0.75 +0.6
290,266 - SO0282 0.75 +1.1
290,266 - SO0282 0.75 +0.5
290,272 + SO0282 0.76 -0.0
290,272 + SO0282 0.76 -2.4
290,272 + SO0282 0.76 -0.0
290,273 - SO0282 0.76 +0.6
290,275 - SO0282 0.76 +2.3
290,282 + SO0282 0.77 -1.6
290,282 - SO0282 0.77 -2.1
290,291 + SO0282 0.79 -2.0
290,303 - SO0282 0.81 +0.7
290,318 + SO0282 0.84 -0.5
290,327 - SO0282 0.85 -0.3
290,327 - SO0282 0.85 +0.3
290,343 + SO0282 0.88 +0.0
290,343 + SO0282 0.88 +0.5
290,343 + SO0282 0.88 -2.4
290,343 + SO0282 0.88 -0.6
290,343 + SO0282 0.88 +0.5
290,343 + SO0282 0.88 -1.5
290,343 + SO0282 0.88 +1.7
290,343 + SO0282 0.88 +0.9
290,351 - SO0282 0.89 -1.6
290,351 - SO0282 0.89 +0.0
290,351 - SO0282 0.89 -0.5
290,351 - SO0282 0.89 +0.5
290,351 - SO0282 0.89 -0.7
290,351 - SO0282 0.89 +1.4
290,351 - SO0282 0.89 -0.2
290,355 + -2.9
290,378 - -1.0
290,378 - -2.2
290,420 + -1.0
290,428 - +1.8
290,428 - -1.4
290,428 - -2.3
290,474 - SO0283 0.10 +0.8
290,533 + SO0283 0.20 +4.1
290,536 - SO0283 0.20 +0.0
290,567 - SO0283 0.25 +1.5
290,567 - SO0283 0.25 -1.9
290,567 - SO0283 0.25 +0.1
290,577 - SO0283 0.27 +1.6
290,581 + SO0283 0.28 +0.5
290,581 + SO0283 0.28 -0.4
290,584 - SO0283 0.28 +0.9
290,597 - SO0283 0.30 -0.2
290,630 + SO0283 0.35 +0.3
290,630 + SO0283 0.35 +0.5
290,631 + SO0283 0.36 +2.8
290,631 + SO0283 0.36 -2.1
290,637 + SO0283 0.37 +1.8
290,638 - SO0283 0.37 +1.9
290,638 - SO0283 0.37 -0.2
290,639 - SO0283 0.37 -0.1
290,642 + SO0283 0.37 -2.3
290,650 + SO0283 0.39 -1.6
290,731 + SO0283 0.52 -1.6
290,733 - SO0283 0.52 +0.8
290,760 - SO0283 0.56 -0.9
290,766 + SO0283 0.57 +0.5
290,766 - SO0283 0.57 -0.4
290,825 - SO0283 0.67 +0.2
290,846 + SO0283 0.70 +0.7
290,860 + SO0283 0.72 +0.2
290,861 + SO0283 0.73 +0.0
290,868 + SO0283 0.74 -1.1
290,869 - SO0283 0.74 -0.5
290,876 - SO0283 0.75 -3.1
290,894 + SO0283 0.78 +1.1
290,932 - SO0283 0.84 -0.6
290,958 - SO0283 0.88 +0.8
290,967 + SO0283 0.90 +0.2
290,967 + SO0283 0.90 +1.0
290,975 - +1.1
290,975 - +2.1
290,975 - +1.6
290,975 - +2.5
290,987 + -1.0
290,987 + +0.5
290,995 - +0.9
290,995 - +2.9
290,995 - +1.3
291,000 - -0.4
291,037 + -1.9
291,043 - +0.6
291,043 - +2.3
291,059 - -1.4
291,093 + SO0284 0.12 +1.0
291,094 + SO0284 0.12 +0.5
291,099 - SO0284 0.13 +1.8
291,101 - SO0284 0.14 -1.6
291,117 + SO0284 0.17 -0.4
291,135 + SO0284 0.20 -1.1
291,135 + SO0284 0.20 +1.0
291,137 - SO0284 0.21 +1.1
291,148 + SO0284 0.23 -1.7
291,161 + SO0284 0.25 -1.9
291,173 + SO0284 0.28 -1.4
291,192 + SO0284 0.31 -1.7
291,196 - SO0284 0.32 -0.2
291,205 + SO0284 0.34 -1.1
291,205 + SO0284 0.34 +1.6
291,213 - SO0284 0.35 -0.0
291,263 - SO0284 0.45 +2.0
291,263 - SO0284 0.45 -0.6
291,354 + SO0284 0.63 -0.8
291,362 - SO0284 0.64 -0.3
291,362 - SO0284 0.64 -2.2
291,389 - SO0284 0.70 +1.7
291,391 + SO0284 0.70 -0.6
291,391 + SO0284 0.70 +1.3
291,391 + SO0284 0.70 -0.7
291,391 + SO0284 0.70 -0.5
291,399 - SO0284 0.72 -1.3
291,399 - SO0284 0.72 -1.3
291,399 - SO0284 0.72 -0.9
291,399 - SO0284 0.72 +2.3
291,408 - SO0284 0.73 +0.8
291,408 - SO0284 0.73 +0.5
291,413 - SO0284 0.74 +0.2
291,413 - SO0284 0.74 +0.3

Or see this region's nucleotide sequence