Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2210

Experiment: KB with Gambogic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2209 and Psyr_2210 are separated by 76 nucleotidesPsyr_2210 and Psyr_2211 overlap by 4 nucleotides Psyr_2209: Psyr_2209 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 2,567,177 to 2,568,151 _2209 Psyr_2210: Psyr_2210 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein, at 2,568,228 to 2,569,187 _2210 Psyr_2211: Psyr_2211 - monooxygenase, NtaA/SnaA/SoxA family, at 2,569,184 to 2,570,530 _2211 Position (kb) 2568 2569 2570Strain fitness (log2 ratio) -2 -1 0 1 2at 2567.302 kb on - strand, within Psyr_2209at 2567.481 kb on + strand, within Psyr_2209at 2567.482 kb on - strand, within Psyr_2209at 2567.494 kb on - strand, within Psyr_2209at 2567.691 kb on + strand, within Psyr_2209at 2567.745 kb on - strand, within Psyr_2209at 2567.745 kb on - strand, within Psyr_2209at 2567.818 kb on - strand, within Psyr_2209at 2568.364 kb on - strand, within Psyr_2210at 2568.537 kb on + strand, within Psyr_2210at 2568.537 kb on + strand, within Psyr_2210at 2568.537 kb on + strand, within Psyr_2210at 2568.538 kb on - strandat 2568.977 kb on - strand, within Psyr_2210at 2569.012 kb on + strand, within Psyr_2210at 2569.013 kb on - strand, within Psyr_2210at 2569.282 kb on - strandat 2569.282 kb on - strandat 2569.338 kb on + strand, within Psyr_2211at 2569.788 kb on + strand, within Psyr_2211at 2569.791 kb on + strand, within Psyr_2211at 2569.791 kb on + strand, within Psyr_2211at 2569.791 kb on + strand, within Psyr_2211at 2569.859 kb on - strand, within Psyr_2211

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gambogic Acid 10 mM
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2,567,302 - Psyr_2209 0.13 -0.4
2,567,481 + Psyr_2209 0.31 -0.3
2,567,482 - Psyr_2209 0.31 -0.2
2,567,494 - Psyr_2209 0.33 -1.0
2,567,691 + Psyr_2209 0.53 -1.4
2,567,745 - Psyr_2209 0.58 -0.1
2,567,745 - Psyr_2209 0.58 -0.6
2,567,818 - Psyr_2209 0.66 -1.2
2,568,364 - Psyr_2210 0.14 -1.4
2,568,537 + Psyr_2210 0.32 -0.0
2,568,537 + Psyr_2210 0.32 -0.2
2,568,537 + Psyr_2210 0.32 +0.8
2,568,538 - +1.8
2,568,977 - Psyr_2210 0.78 +1.2
2,569,012 + Psyr_2210 0.82 +0.4
2,569,013 - Psyr_2210 0.82 -0.6
2,569,282 - -0.5
2,569,282 - -1.8
2,569,338 + Psyr_2211 0.11 +0.4
2,569,788 + Psyr_2211 0.45 -0.7
2,569,791 + Psyr_2211 0.45 -1.0
2,569,791 + Psyr_2211 0.45 +0.9
2,569,791 + Psyr_2211 0.45 -1.4
2,569,859 - Psyr_2211 0.50 +1.0

Or see this region's nucleotide sequence