Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1060

Experiment: KB with Gambogic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1059 and Psyr_1060 overlap by 4 nucleotidesPsyr_1060 and Psyr_1061 are separated by 2 nucleotides Psyr_1059: Psyr_1059 - alginate export porin, at 1,199,033 to 1,200,517 _1059 Psyr_1060: Psyr_1060 - Sel1-like repeat protein, at 1,200,514 to 1,201,926 _1060 Psyr_1061: Psyr_1061 - alginate biosynthesis protein Alg44, at 1,201,929 to 1,203,101 _1061 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1199.532 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.703 kb on + strand, within Psyr_1059at 1199.704 kb on - strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.736 kb on + strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1199.737 kb on - strand, within Psyr_1059at 1200.153 kb on + strand, within Psyr_1059at 1200.518 kb on - strandat 1200.744 kb on + strand, within Psyr_1060at 1200.745 kb on - strand, within Psyr_1060at 1200.872 kb on + strand, within Psyr_1060at 1200.872 kb on + strand, within Psyr_1060at 1200.873 kb on - strand, within Psyr_1060at 1200.873 kb on - strand, within Psyr_1060at 1200.888 kb on - strand, within Psyr_1060at 1200.888 kb on - strand, within Psyr_1060at 1200.974 kb on + strand, within Psyr_1060at 1200.977 kb on + strand, within Psyr_1060at 1200.977 kb on + strand, within Psyr_1060at 1200.978 kb on - strand, within Psyr_1060at 1200.978 kb on - strand, within Psyr_1060at 1201.037 kb on + strand, within Psyr_1060at 1201.037 kb on + strand, within Psyr_1060at 1201.038 kb on - strand, within Psyr_1060at 1201.038 kb on - strand, within Psyr_1060at 1201.319 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.404 kb on - strand, within Psyr_1060at 1201.508 kb on + strand, within Psyr_1060at 1201.673 kb on + strand, within Psyr_1060at 1201.678 kb on - strand, within Psyr_1060at 1201.725 kb on + strand, within Psyr_1060at 1201.754 kb on + strand, within Psyr_1060at 1201.754 kb on + strand, within Psyr_1060at 1201.778 kb on + strand, within Psyr_1060at 1201.912 kb on + strandat 1201.931 kb on - strandat 1202.183 kb on - strand, within Psyr_1061at 1202.335 kb on + strand, within Psyr_1061at 1202.336 kb on - strand, within Psyr_1061at 1202.546 kb on - strand, within Psyr_1061at 1202.546 kb on - strand, within Psyr_1061at 1202.546 kb on - strand, within Psyr_1061at 1202.554 kb on + strand, within Psyr_1061at 1202.554 kb on + strand, within Psyr_1061at 1202.555 kb on - strand, within Psyr_1061at 1202.571 kb on - strand, within Psyr_1061at 1202.571 kb on - strand, within Psyr_1061

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gambogic Acid 10 mM
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1,199,532 + Psyr_1059 0.34 +0.7
1,199,703 + Psyr_1059 0.45 -0.6
1,199,703 + Psyr_1059 0.45 -0.9
1,199,703 + Psyr_1059 0.45 -0.1
1,199,704 - Psyr_1059 0.45 -0.2
1,199,736 + Psyr_1059 0.47 +0.7
1,199,736 + Psyr_1059 0.47 -1.2
1,199,736 + Psyr_1059 0.47 -1.1
1,199,736 + Psyr_1059 0.47 +0.4
1,199,737 - Psyr_1059 0.47 -0.5
1,199,737 - Psyr_1059 0.47 +0.5
1,199,737 - Psyr_1059 0.47 -0.5
1,199,737 - Psyr_1059 0.47 +0.6
1,199,737 - Psyr_1059 0.47 +0.0
1,200,153 + Psyr_1059 0.75 -0.4
1,200,518 - +0.4
1,200,744 + Psyr_1060 0.16 +0.7
1,200,745 - Psyr_1060 0.16 -0.3
1,200,872 + Psyr_1060 0.25 +0.0
1,200,872 + Psyr_1060 0.25 +1.2
1,200,873 - Psyr_1060 0.25 +0.3
1,200,873 - Psyr_1060 0.25 -0.2
1,200,888 - Psyr_1060 0.26 +2.8
1,200,888 - Psyr_1060 0.26 -0.2
1,200,974 + Psyr_1060 0.33 -1.3
1,200,977 + Psyr_1060 0.33 +0.3
1,200,977 + Psyr_1060 0.33 +0.1
1,200,978 - Psyr_1060 0.33 -0.5
1,200,978 - Psyr_1060 0.33 +0.6
1,201,037 + Psyr_1060 0.37 -0.3
1,201,037 + Psyr_1060 0.37 -0.4
1,201,038 - Psyr_1060 0.37 +1.7
1,201,038 - Psyr_1060 0.37 +0.7
1,201,319 + Psyr_1060 0.57 +1.5
1,201,385 + Psyr_1060 0.62 +2.0
1,201,385 + Psyr_1060 0.62 +0.6
1,201,385 + Psyr_1060 0.62 -0.2
1,201,385 + Psyr_1060 0.62 -0.6
1,201,385 + Psyr_1060 0.62 -0.1
1,201,385 + Psyr_1060 0.62 -0.6
1,201,385 + Psyr_1060 0.62 -0.9
1,201,385 + Psyr_1060 0.62 -1.1
1,201,385 + Psyr_1060 0.62 +1.3
1,201,385 + Psyr_1060 0.62 +0.3
1,201,385 + Psyr_1060 0.62 -0.3
1,201,386 - Psyr_1060 0.62 -1.9
1,201,386 - Psyr_1060 0.62 -0.3
1,201,386 - Psyr_1060 0.62 -1.7
1,201,386 - Psyr_1060 0.62 +1.4
1,201,386 - Psyr_1060 0.62 +0.6
1,201,386 - Psyr_1060 0.62 +0.1
1,201,386 - Psyr_1060 0.62 +0.3
1,201,404 - Psyr_1060 0.63 +0.1
1,201,508 + Psyr_1060 0.70 +1.9
1,201,673 + Psyr_1060 0.82 -0.5
1,201,678 - Psyr_1060 0.82 +1.1
1,201,725 + Psyr_1060 0.86 +0.7
1,201,754 + Psyr_1060 0.88 +0.5
1,201,754 + Psyr_1060 0.88 +0.1
1,201,778 + Psyr_1060 0.89 -0.3
1,201,912 + -0.1
1,201,931 - -2.6
1,202,183 - Psyr_1061 0.22 +1.8
1,202,335 + Psyr_1061 0.35 -1.7
1,202,336 - Psyr_1061 0.35 +0.3
1,202,546 - Psyr_1061 0.53 +0.4
1,202,546 - Psyr_1061 0.53 +1.8
1,202,546 - Psyr_1061 0.53 +0.8
1,202,554 + Psyr_1061 0.53 -0.3
1,202,554 + Psyr_1061 0.53 +0.1
1,202,555 - Psyr_1061 0.53 -0.6
1,202,571 - Psyr_1061 0.55 -0.1
1,202,571 - Psyr_1061 0.55 +0.9

Or see this region's nucleotide sequence