Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0644

Experiment: KB with Gambogic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0643 and Psyr_0644 are separated by 27 nucleotidesPsyr_0644 and Psyr_0645 are separated by 108 nucleotides Psyr_0643: Psyr_0643 - MaoC-like dehydratase, at 730,452 to 731,312 _0643 Psyr_0644: Psyr_0644 - Short-chain dehydrogenase/reductase SDR, at 731,340 to 732,695 _0644 Psyr_0645: Psyr_0645 - 3-ketoacyl-CoA thiolase, at 732,804 to 734,081 _0645 Position (kb) 731 732 733Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 730.352 kb on + strandat 730.352 kb on + strandat 730.352 kb on + strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.353 kb on - strandat 730.484 kb on + strandat 730.484 kb on + strandat 730.484 kb on + strandat 730.485 kb on - strandat 730.485 kb on - strandat 730.485 kb on - strandat 730.750 kb on + strand, within Psyr_0643at 730.761 kb on + strand, within Psyr_0643at 730.761 kb on + strand, within Psyr_0643at 730.762 kb on - strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.975 kb on + strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 730.976 kb on - strand, within Psyr_0643at 731.110 kb on + strand, within Psyr_0643at 731.110 kb on + strand, within Psyr_0643at 731.341 kb on + strandat 731.341 kb on + strandat 731.341 kb on + strandat 731.342 kb on - strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.367 kb on + strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.368 kb on - strandat 731.373 kb on + strandat 731.373 kb on + strandat 731.373 kb on + strandat 731.373 kb on + strandat 731.374 kb on - strandat 731.374 kb on - strandat 731.374 kb on - strandat 731.374 kb on - strandat 731.374 kb on - strandat 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strandat 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strand, within Psyr_0644at 731.626 kb on + strand, within Psyr_0644at 731.627 kb on - strand, within Psyr_0644at 731.627 kb on - strand, within Psyr_0644at 731.627 kb on - strand, within Psyr_0644at 731.718 kb on + strand, within Psyr_0644at 731.718 kb on + strand, within Psyr_0644at 731.718 kb on + strand, within Psyr_0644at 731.718 kb on + strand, within Psyr_0644at 731.719 kb on - strand, within Psyr_0644at 731.719 kb on - strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.832 kb on + strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.833 kb on - strand, within Psyr_0644at 731.892 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644at 731.959 kb on - strand, within Psyr_0644at 732.494 kb on - strand, within Psyr_0644at 732.494 kb on - strand, within Psyr_0644at 732.494 kb on - strand, within Psyr_0644at 732.494 kb on - strand, within Psyr_0644at 732.677 kb on + strandat 732.678 kb on - strandat 732.679 kb on + strandat 732.679 kb on + strandat 732.680 kb on - strandat 732.680 kb on - strandat 732.680 kb on - strandat 732.680 kb on - strandat 733.057 kb on - strand, within Psyr_0645at 733.057 kb on - strand, within Psyr_0645at 733.219 kb on + strand, within Psyr_0645at 733.219 kb on + strand, within Psyr_0645at 733.370 kb on - strand, within Psyr_0645at 733.370 kb on - strand, within Psyr_0645at 733.465 kb on - strand, within Psyr_0645at 733.465 kb on - strand, within Psyr_0645

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gambogic Acid 10 mM
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730,352 + +0.2
730,352 + -0.4
730,352 + +0.2
730,353 - -0.8
730,353 - +0.5
730,353 - -0.5
730,353 - -0.1
730,484 + +0.9
730,484 + +0.7
730,484 + -0.5
730,485 - +0.9
730,485 - -0.9
730,485 - +0.1
730,750 + Psyr_0643 0.35 -0.5
730,761 + Psyr_0643 0.36 +0.5
730,761 + Psyr_0643 0.36 -0.0
730,762 - Psyr_0643 0.36 -0.0
730,975 + Psyr_0643 0.61 +0.5
730,975 + Psyr_0643 0.61 +0.5
730,975 + Psyr_0643 0.61 +0.4
730,975 + Psyr_0643 0.61 -0.7
730,975 + Psyr_0643 0.61 -0.6
730,975 + Psyr_0643 0.61 -0.5
730,975 + Psyr_0643 0.61 +0.3
730,975 + Psyr_0643 0.61 -1.1
730,976 - Psyr_0643 0.61 -2.0
730,976 - Psyr_0643 0.61 -0.3
730,976 - Psyr_0643 0.61 -0.0
730,976 - Psyr_0643 0.61 +1.0
730,976 - Psyr_0643 0.61 +2.1
730,976 - Psyr_0643 0.61 -0.2
730,976 - Psyr_0643 0.61 -0.2
730,976 - Psyr_0643 0.61 +0.5
730,976 - Psyr_0643 0.61 -2.4
730,976 - Psyr_0643 0.61 +0.1
730,976 - Psyr_0643 0.61 +0.2
731,110 + Psyr_0643 0.76 -0.2
731,110 + Psyr_0643 0.76 -1.9
731,341 + +0.4
731,341 + -0.5
731,341 + -0.1
731,342 - -0.5
731,367 + +0.9
731,367 + +0.3
731,367 + -0.4
731,367 + -1.9
731,367 + -1.3
731,367 + +2.0
731,367 + -0.8
731,367 + -0.3
731,367 + +0.8
731,367 + +1.9
731,367 + -1.3
731,367 + +2.4
731,367 + +2.7
731,367 + +0.3
731,367 + +2.3
731,367 + -0.4
731,367 + -0.2
731,367 + -1.6
731,368 - -2.9
731,368 - +0.2
731,368 - +1.6
731,368 - -0.7
731,368 - -0.1
731,368 - -1.5
731,368 - +1.3
731,368 - -0.4
731,368 - -1.5
731,368 - -0.0
731,368 - +0.4
731,368 - -1.3
731,368 - -2.0
731,368 - +0.1
731,368 - +0.3
731,373 + -0.4
731,373 + -2.0
731,373 + +1.6
731,373 + -0.4
731,374 - +0.1
731,374 - -0.3
731,374 - -0.0
731,374 - -1.5
731,374 - -0.2
731,626 + Psyr_0644 0.21 -0.1
731,626 + Psyr_0644 0.21 +0.0
731,626 + Psyr_0644 0.21 +1.6
731,626 + +3.9
731,626 + Psyr_0644 0.21 +0.2
731,626 + Psyr_0644 0.21 +0.3
731,626 + Psyr_0644 0.21 -0.6
731,627 - Psyr_0644 0.21 +1.5
731,627 - Psyr_0644 0.21 +0.5
731,627 - Psyr_0644 0.21 +0.6
731,718 + Psyr_0644 0.28 -0.7
731,718 + Psyr_0644 0.28 +0.2
731,718 + Psyr_0644 0.28 +0.1
731,718 + Psyr_0644 0.28 +1.0
731,719 - Psyr_0644 0.28 -0.5
731,719 - Psyr_0644 0.28 +0.2
731,832 + Psyr_0644 0.36 +0.8
731,832 + Psyr_0644 0.36 +0.4
731,832 + Psyr_0644 0.36 +0.1
731,832 + Psyr_0644 0.36 -0.1
731,832 + Psyr_0644 0.36 +0.6
731,832 + Psyr_0644 0.36 -0.0
731,832 + Psyr_0644 0.36 -0.5
731,832 + Psyr_0644 0.36 +0.3
731,833 - Psyr_0644 0.36 -0.1
731,833 - Psyr_0644 0.36 +0.8
731,833 - Psyr_0644 0.36 +0.5
731,833 - Psyr_0644 0.36 +1.4
731,833 - Psyr_0644 0.36 -0.4
731,833 - Psyr_0644 0.36 +1.7
731,892 - Psyr_0644 0.41 +0.3
731,959 - Psyr_0644 0.46 -0.9
731,959 - Psyr_0644 0.46 -1.7
731,959 - Psyr_0644 0.46 +0.1
732,494 - Psyr_0644 0.85 +0.1
732,494 - Psyr_0644 0.85 +0.7
732,494 - Psyr_0644 0.85 +0.0
732,494 - Psyr_0644 0.85 +0.3
732,677 + -0.0
732,678 - +0.6
732,679 + -0.7
732,679 + +0.6
732,680 - -1.0
732,680 - -0.6
732,680 - -0.9
732,680 - -1.2
733,057 - Psyr_0645 0.20 +0.3
733,057 - Psyr_0645 0.20 +0.0
733,219 + Psyr_0645 0.32 -0.5
733,219 + Psyr_0645 0.32 -1.5
733,370 - Psyr_0645 0.44 -0.0
733,370 - Psyr_0645 0.44 +0.4
733,465 - Psyr_0645 0.52 +0.7
733,465 - Psyr_0645 0.52 +0.2

Or see this region's nucleotide sequence