Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0339

Experiment: KB with Gambogic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0338 and Psyr_0339 are separated by 163 nucleotidesPsyr_0339 and Psyr_0340 are separated by 38 nucleotides Psyr_0338: Psyr_0338 - ABC transporter, at 360,224 to 361,099 _0338 Psyr_0339: Psyr_0339 - Binding-protein-dependent transport systems inner membrane component, at 361,263 to 362,198 _0339 Psyr_0340: Psyr_0340 - ABC transporter, periplasmic substrate-binding protein, at 362,237 to 363,256 _0340 Position (kb) 361 362 363Strain fitness (log2 ratio) -2 -1 0 1 2 3at 360.647 kb on + strand, within Psyr_0338at 360.647 kb on + strand, within Psyr_0338at 360.648 kb on - strand, within Psyr_0338at 360.940 kb on - strand, within Psyr_0338at 360.965 kb on + strand, within Psyr_0338at 360.965 kb on + strand, within Psyr_0338at 360.966 kb on - strand, within Psyr_0338at 360.966 kb on - strand, within Psyr_0338at 360.966 kb on - strand, within Psyr_0338at 361.016 kb on - strandat 361.016 kb on - strandat 361.095 kb on - strandat 361.113 kb on + strandat 361.114 kb on - strandat 361.169 kb on + strandat 361.169 kb on + strandat 361.198 kb on + strandat 361.199 kb on - strandat 361.199 kb on - strandat 361.253 kb on + strandat 361.253 kb on + strandat 361.258 kb on - strandat 361.273 kb on + strandat 361.274 kb on - strandat 361.274 kb on - strandat 361.276 kb on + strandat 361.276 kb on + strandat 361.276 kb on + strandat 361.277 kb on - strandat 361.277 kb on - strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.298 kb on + strandat 361.300 kb on + strandat 361.300 kb on + strandat 361.300 kb on + strandat 361.363 kb on - strand, within Psyr_0339at 361.558 kb on - strand, within Psyr_0339at 361.558 kb on - strand, within Psyr_0339at 361.626 kb on + strand, within Psyr_0339at 361.747 kb on + strand, within Psyr_0339at 361.835 kb on + strand, within Psyr_0339at 361.835 kb on + strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.836 kb on - strand, within Psyr_0339at 361.839 kb on + strand, within Psyr_0339at 361.840 kb on - strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.890 kb on + strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 361.891 kb on - strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.052 kb on + strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.053 kb on - strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.079 kb on + strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.080 kb on - strand, within Psyr_0339at 362.218 kb on + strandat 362.606 kb on + strand, within Psyr_0340at 362.606 kb on + strand, within Psyr_0340at 362.606 kb on + strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.607 kb on - strand, within Psyr_0340at 362.747 kb on + strand, within Psyr_0340at 362.747 kb on + strand, within Psyr_0340at 362.747 kb on + strand, within Psyr_0340at 362.747 kb on + strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.748 kb on - strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.887 kb on + strand, within Psyr_0340at 362.888 kb on - strand, within Psyr_0340at 362.888 kb on - strand, within Psyr_0340at 362.888 kb on - strand, within Psyr_0340at 362.903 kb on + strand, within Psyr_0340at 362.903 kb on + strand, within Psyr_0340at 362.903 kb on + strand, within Psyr_0340at 362.904 kb on - strand, within Psyr_0340at 362.904 kb on - strand, within Psyr_0340at 362.942 kb on + strand, within Psyr_0340at 362.942 kb on + strand, within Psyr_0340at 362.942 kb on + strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.943 kb on - strand, within Psyr_0340at 362.981 kb on + strand, within Psyr_0340at 362.981 kb on + strand, within Psyr_0340at 362.981 kb on + strand, within Psyr_0340at 362.982 kb on - strand, within Psyr_0340at 362.982 kb on - strand, within Psyr_0340at 362.993 kb on + strand, within Psyr_0340at 362.993 kb on + strand, within Psyr_0340at 362.993 kb on + strand, within Psyr_0340at 362.994 kb on - strand, within Psyr_0340at 362.994 kb on - strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.056 kb on + strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.057 kb on - strand, within Psyr_0340at 363.159 kb on - strandat 363.159 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Gambogic Acid 10 mM
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360,647 + Psyr_0338 0.48 +0.6
360,647 + Psyr_0338 0.48 -0.8
360,648 - Psyr_0338 0.48 -2.2
360,940 - Psyr_0338 0.82 +1.2
360,965 + Psyr_0338 0.85 -0.2
360,965 + Psyr_0338 0.85 -1.1
360,966 - Psyr_0338 0.85 +0.7
360,966 - Psyr_0338 0.85 +0.7
360,966 - Psyr_0338 0.85 +0.2
361,016 - +1.0
361,016 - +0.1
361,095 - -0.1
361,113 + +0.0
361,114 - -0.6
361,169 + +0.9
361,169 + +0.6
361,198 + -0.2
361,199 - +0.4
361,199 - -0.1
361,253 + +2.2
361,253 + -0.3
361,258 - -0.2
361,273 + +0.2
361,274 - -0.4
361,274 - -0.2
361,276 + +1.1
361,276 + -0.2
361,276 + +1.4
361,277 - +0.5
361,277 - +0.2
361,298 + -0.5
361,298 + -0.2
361,298 + +0.8
361,298 + +0.8
361,298 + +1.3
361,300 + +0.3
361,300 + -0.4
361,300 + -0.4
361,363 - Psyr_0339 0.11 -1.0
361,558 - Psyr_0339 0.32 +1.7
361,558 - Psyr_0339 0.32 -0.5
361,626 + Psyr_0339 0.39 +0.2
361,747 + Psyr_0339 0.52 -0.5
361,835 + Psyr_0339 0.61 -1.8
361,835 + Psyr_0339 0.61 +0.6
361,836 - Psyr_0339 0.61 +0.1
361,836 - Psyr_0339 0.61 +0.1
361,836 - Psyr_0339 0.61 -1.4
361,836 - Psyr_0339 0.61 -0.6
361,839 + Psyr_0339 0.62 -0.2
361,840 - Psyr_0339 0.62 -0.1
361,890 + Psyr_0339 0.67 -0.0
361,890 + Psyr_0339 0.67 -0.5
361,890 + Psyr_0339 0.67 -0.7
361,890 + Psyr_0339 0.67 -0.8
361,890 + Psyr_0339 0.67 -0.2
361,890 + Psyr_0339 0.67 -0.4
361,890 + Psyr_0339 0.67 -0.9
361,890 + Psyr_0339 0.67 +0.3
361,890 + Psyr_0339 0.67 +0.8
361,890 + Psyr_0339 0.67 -0.2
361,890 + Psyr_0339 0.67 -0.8
361,890 + Psyr_0339 0.67 -0.4
361,890 + Psyr_0339 0.67 -0.6
361,890 + Psyr_0339 0.67 -0.1
361,891 - Psyr_0339 0.67 +0.0
361,891 - Psyr_0339 0.67 -2.2
361,891 - Psyr_0339 0.67 +0.4
361,891 - Psyr_0339 0.67 +0.4
361,891 - Psyr_0339 0.67 -0.2
361,891 - Psyr_0339 0.67 +0.0
361,891 - Psyr_0339 0.67 +0.1
361,891 - Psyr_0339 0.67 +1.0
362,052 + Psyr_0339 0.84 -1.2
362,052 + Psyr_0339 0.84 -0.4
362,052 + Psyr_0339 0.84 -0.2
362,052 + Psyr_0339 0.84 +1.4
362,052 + Psyr_0339 0.84 -0.2
362,053 - Psyr_0339 0.84 +0.4
362,053 - Psyr_0339 0.84 +0.4
362,053 - Psyr_0339 0.84 +0.4
362,053 - Psyr_0339 0.84 -0.6
362,079 + Psyr_0339 0.87 +0.6
362,079 + Psyr_0339 0.87 -0.2
362,079 + Psyr_0339 0.87 -0.1
362,079 + Psyr_0339 0.87 -0.6
362,079 + Psyr_0339 0.87 -1.0
362,079 + Psyr_0339 0.87 +1.1
362,079 + Psyr_0339 0.87 -1.1
362,079 + Psyr_0339 0.87 -1.1
362,080 - Psyr_0339 0.87 +0.0
362,080 - Psyr_0339 0.87 +0.2
362,080 - Psyr_0339 0.87 +0.7
362,080 - Psyr_0339 0.87 -1.3
362,080 - Psyr_0339 0.87 -1.3
362,080 - Psyr_0339 0.87 +0.4
362,080 - Psyr_0339 0.87 -0.5
362,218 + +0.2
362,606 + Psyr_0340 0.36 +1.2
362,606 + Psyr_0340 0.36 +0.3
362,606 + Psyr_0340 0.36 -0.9
362,607 - Psyr_0340 0.36 -0.3
362,607 - Psyr_0340 0.36 -1.5
362,607 - Psyr_0340 0.36 +0.8
362,607 - Psyr_0340 0.36 -1.3
362,607 - Psyr_0340 0.36 +0.9
362,747 + Psyr_0340 0.50 +1.7
362,747 + Psyr_0340 0.50 +0.4
362,747 + Psyr_0340 0.50 -1.4
362,747 + Psyr_0340 0.50 +3.0
362,748 - Psyr_0340 0.50 +0.7
362,748 - Psyr_0340 0.50 -0.9
362,748 - Psyr_0340 0.50 +0.8
362,748 - Psyr_0340 0.50 +0.1
362,748 - Psyr_0340 0.50 -2.2
362,887 + Psyr_0340 0.64 +0.3
362,887 + Psyr_0340 0.64 +0.6
362,887 + Psyr_0340 0.64 +0.7
362,887 + Psyr_0340 0.64 -0.2
362,887 + Psyr_0340 0.64 -0.4
362,887 + Psyr_0340 0.64 -0.0
362,888 - Psyr_0340 0.64 -1.1
362,888 - Psyr_0340 0.64 +0.1
362,888 - Psyr_0340 0.64 -0.7
362,903 + Psyr_0340 0.65 +0.4
362,903 + Psyr_0340 0.65 +0.7
362,903 + Psyr_0340 0.65 +0.6
362,904 - Psyr_0340 0.65 -1.8
362,904 - Psyr_0340 0.65 +0.6
362,942 + Psyr_0340 0.69 +0.2
362,942 + Psyr_0340 0.69 -1.8
362,942 + Psyr_0340 0.69 -1.1
362,943 - Psyr_0340 0.69 -1.0
362,943 - Psyr_0340 0.69 -0.5
362,943 - Psyr_0340 0.69 +1.7
362,943 - Psyr_0340 0.69 -0.2
362,943 - Psyr_0340 0.69 -0.1
362,943 - Psyr_0340 0.69 -1.2
362,981 + Psyr_0340 0.73 +1.0
362,981 + Psyr_0340 0.73 -0.3
362,981 + Psyr_0340 0.73 -0.6
362,982 - Psyr_0340 0.73 +0.2
362,982 - Psyr_0340 0.73 -2.2
362,993 + Psyr_0340 0.74 +1.0
362,993 + Psyr_0340 0.74 +0.1
362,993 + Psyr_0340 0.74 -0.4
362,994 - Psyr_0340 0.74 -0.5
362,994 - Psyr_0340 0.74 +1.1
363,056 + Psyr_0340 0.80 -0.5
363,056 + Psyr_0340 0.80 +0.2
363,056 + Psyr_0340 0.80 +0.3
363,056 + Psyr_0340 0.80 +1.1
363,056 + Psyr_0340 0.80 -2.1
363,056 + Psyr_0340 0.80 -0.4
363,056 + Psyr_0340 0.80 -0.5
363,057 - Psyr_0340 0.80 +0.5
363,057 - Psyr_0340 0.80 -0.4
363,057 - Psyr_0340 0.80 -1.4
363,057 - Psyr_0340 0.80 -0.5
363,057 - Psyr_0340 0.80 -0.6
363,159 - -0.2
363,159 - -0.1

Or see this region's nucleotide sequence