Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01480 and PGA1_262p01490 are separated by 32 nucleotides PGA1_262p01490 and PGA1_262p01500 overlap by 8 nucleotides PGA1_262p01500 and PGA1_262p01510 overlap by 4 nucleotides PGA1_262p01510 and PGA1_262p01520 are separated by 12 nucleotides
PGA1_262p01480: PGA1_262p01480 - transcriptional regulator, AraC family, at 161,529 to 162,536
_262p01480
PGA1_262p01490: PGA1_262p01490 - putative sarcosine oxidase, gamma subunit, at 162,569 to 163,132
_262p01490
PGA1_262p01500: PGA1_262p01500 - sarcosine oxidase subunit alpha, at 163,125 to 166,091
_262p01500
PGA1_262p01510: PGA1_262p01510 - sarcosine oxidase, delta subunit, at 166,088 to 166,396
_262p01510
PGA1_262p01520: PGA1_262p01520 - sarcosine oxidase 3 subunit beta, at 166,409 to 167,659
_262p01520
Position (kb) 163
164
165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 162.267 kb on - strand, within PGA1_262p01480 at 162.312 kb on - strand, within PGA1_262p01480 at 162.317 kb on - strand, within PGA1_262p01480 at 162.588 kb on + strand at 162.588 kb on + strand at 162.694 kb on - strand, within PGA1_262p01490 at 162.740 kb on + strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 163.116 kb on - strand at 163.136 kb on + strand at 163.246 kb on + strand at 163.302 kb on + strand at 163.310 kb on - strand at 163.436 kb on - strand, within PGA1_262p01500 at 163.576 kb on - strand, within PGA1_262p01500 at 163.592 kb on - strand, within PGA1_262p01500 at 163.729 kb on + strand, within PGA1_262p01500 at 163.731 kb on - strand, within PGA1_262p01500 at 163.827 kb on + strand, within PGA1_262p01500 at 163.848 kb on + strand, within PGA1_262p01500 at 163.885 kb on + strand, within PGA1_262p01500 at 164.021 kb on + strand, within PGA1_262p01500 at 164.404 kb on - strand, within PGA1_262p01500 at 164.425 kb on - strand, within PGA1_262p01500 at 164.493 kb on + strand, within PGA1_262p01500 at 164.542 kb on - strand, within PGA1_262p01500 at 164.692 kb on - strand, within PGA1_262p01500 at 164.774 kb on + strand, within PGA1_262p01500 at 164.787 kb on - strand, within PGA1_262p01500 at 164.816 kb on - strand, within PGA1_262p01500 at 164.816 kb on - strand, within PGA1_262p01500 at 164.823 kb on + strand, within PGA1_262p01500 at 164.984 kb on - strand, within PGA1_262p01500 at 165.038 kb on + strand, within PGA1_262p01500 at 165.429 kb on + strand, within PGA1_262p01500 at 165.690 kb on + strand, within PGA1_262p01500 at 165.690 kb on + strand, within PGA1_262p01500 at 165.698 kb on - strand, within PGA1_262p01500 at 165.698 kb on - strand, within PGA1_262p01500 at 165.905 kb on - strand at 165.952 kb on + strand at 165.952 kb on + strand at 166.158 kb on - strand, within PGA1_262p01510 at 166.200 kb on - strand, within PGA1_262p01510 at 166.200 kb on - strand, within PGA1_262p01510 at 166.283 kb on - strand, within PGA1_262p01510 at 166.402 kb on - strand at 166.554 kb on + strand, within PGA1_262p01520 at 166.554 kb on + strand, within PGA1_262p01520 at 166.758 kb on + strand, within PGA1_262p01520 at 166.924 kb on - strand, within PGA1_262p01520 at 166.947 kb on - strand, within PGA1_262p01520 at 166.972 kb on + strand, within PGA1_262p01520 at 167.015 kb on - strand, within PGA1_262p01520
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 162,267 - PGA1_262p01480 0.73 +1.8 162,312 - PGA1_262p01480 0.78 +3.1 162,317 - PGA1_262p01480 0.78 +0.1 162,588 + +3.3 162,588 + +0.1 162,694 - PGA1_262p01490 0.22 +1.2 162,740 + PGA1_262p01490 0.30 +0.1 162,917 - PGA1_262p01490 0.62 +0.1 162,917 - PGA1_262p01490 0.62 +0.0 163,116 - -0.8 163,136 + +0.2 163,246 + +0.3 163,302 + +1.1 163,310 - +0.7 163,436 - PGA1_262p01500 0.10 -0.7 163,576 - PGA1_262p01500 0.15 +1.1 163,592 - PGA1_262p01500 0.16 +1.8 163,729 + PGA1_262p01500 0.20 -1.5 163,731 - PGA1_262p01500 0.20 +1.7 163,827 + PGA1_262p01500 0.24 -0.9 163,848 + PGA1_262p01500 0.24 -0.5 163,885 + PGA1_262p01500 0.26 +1.0 164,021 + PGA1_262p01500 0.30 +0.9 164,404 - PGA1_262p01500 0.43 +2.1 164,425 - PGA1_262p01500 0.44 -0.0 164,493 + PGA1_262p01500 0.46 +1.1 164,542 - PGA1_262p01500 0.48 +0.4 164,692 - PGA1_262p01500 0.53 -0.6 164,774 + PGA1_262p01500 0.56 -0.3 164,787 - PGA1_262p01500 0.56 -1.0 164,816 - PGA1_262p01500 0.57 +0.9 164,816 - PGA1_262p01500 0.57 +0.5 164,823 + PGA1_262p01500 0.57 -2.3 164,984 - PGA1_262p01500 0.63 +0.3 165,038 + PGA1_262p01500 0.64 +2.7 165,429 + PGA1_262p01500 0.78 -0.0 165,690 + PGA1_262p01500 0.86 -0.8 165,690 + PGA1_262p01500 0.86 +0.8 165,698 - PGA1_262p01500 0.87 -1.3 165,698 - PGA1_262p01500 0.87 +0.1 165,905 - -0.9 165,952 + -1.0 165,952 + +1.2 166,158 - PGA1_262p01510 0.23 +1.1 166,200 - PGA1_262p01510 0.36 +0.7 166,200 - PGA1_262p01510 0.36 +0.2 166,283 - PGA1_262p01510 0.63 +2.1 166,402 - +0.2 166,554 + PGA1_262p01520 0.12 -0.2 166,554 + PGA1_262p01520 0.12 +2.3 166,758 + PGA1_262p01520 0.28 +0.1 166,924 - PGA1_262p01520 0.41 +0.1 166,947 - PGA1_262p01520 0.43 -1.1 166,972 + PGA1_262p01520 0.45 -1.2 167,015 - PGA1_262p01520 0.48 -1.3
Or see this region's nucleotide sequence