Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2638

Experiment: KB with Methyl 6-Hydroxyangolensate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2637 and Psyr_2638 are separated by 47 nucleotidesPsyr_2638 and Psyr_2639 are separated by 481 nucleotides Psyr_2637: Psyr_2637 - FAD dependent oxidoreductase, at 3,203,776 to 3,205,101 _2637 Psyr_2638: Psyr_2638 - Alpha/beta hydrolase fold protein, at 3,205,149 to 3,206,219 _2638 Psyr_2639: Psyr_2639 - hypothetical protein, at 3,206,701 to 3,207,165 _2639 Position (kb) 3205 3206 3207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3204.448 kb on + strand, within Psyr_2637at 3204.488 kb on + strand, within Psyr_2637at 3204.489 kb on - strand, within Psyr_2637at 3204.535 kb on - strand, within Psyr_2637at 3204.575 kb on - strand, within Psyr_2637at 3204.636 kb on + strand, within Psyr_2637at 3204.637 kb on - strand, within Psyr_2637at 3204.811 kb on + strand, within Psyr_2637at 3204.812 kb on - strand, within Psyr_2637at 3204.849 kb on + strand, within Psyr_2637at 3204.849 kb on + strand, within Psyr_2637at 3204.850 kb on - strand, within Psyr_2637at 3204.975 kb on + strandat 3204.999 kb on + strandat 3205.048 kb on + strandat 3205.048 kb on + strandat 3205.049 kb on - strandat 3205.151 kb on - strandat 3205.197 kb on - strandat 3205.198 kb on + strandat 3205.198 kb on + strandat 3205.198 kb on + strandat 3205.199 kb on - strandat 3205.199 kb on - strandat 3205.199 kb on - strandat 3205.253 kb on + strandat 3205.254 kb on - strandat 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.257 kb on + strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.258 kb on - strand, within Psyr_2638at 3205.261 kb on - strand, within Psyr_2638at 3205.414 kb on + strand, within Psyr_2638at 3205.414 kb on + strand, within Psyr_2638at 3205.415 kb on - strand, within Psyr_2638at 3205.507 kb on + strand, within Psyr_2638at 3205.582 kb on + strand, within Psyr_2638at 3205.582 kb on + strand, within Psyr_2638at 3205.583 kb on - strand, within Psyr_2638at 3205.583 kb on - strand, within Psyr_2638at 3205.583 kb on - strand, within Psyr_2638at 3205.831 kb on + strand, within Psyr_2638at 3205.831 kb on + strand, within Psyr_2638at 3205.831 kb on + strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.832 kb on - strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.915 kb on + strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.916 kb on - strand, within Psyr_2638at 3205.918 kb on + strand, within Psyr_2638at 3205.918 kb on + strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.919 kb on - strand, within Psyr_2638at 3205.999 kb on + strand, within Psyr_2638at 3206.000 kb on - strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.053 kb on + strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.054 kb on - strand, within Psyr_2638at 3206.166 kb on + strandat 3206.213 kb on + strandat 3206.213 kb on + strandat 3206.213 kb on + strandat 3206.214 kb on - strandat 3206.214 kb on - strandat 3206.214 kb on - strandat 3206.214 kb on - strandat 3206.223 kb on + strandat 3206.223 kb on + strandat 3206.223 kb on + strandat 3206.223 kb on + strandat 3206.224 kb on - strandat 3206.231 kb on - strandat 3206.233 kb on + strandat 3206.244 kb on + strandat 3206.244 kb on + strandat 3206.245 kb on - strandat 3206.367 kb on + strandat 3206.368 kb on - strandat 3206.421 kb on - strandat 3206.457 kb on + strandat 3206.463 kb on + strandat 3206.604 kb on + strandat 3206.604 kb on + strandat 3206.605 kb on - strandat 3206.631 kb on + strandat 3206.631 kb on + strandat 3206.660 kb on - strandat 3206.690 kb on + strandat 3206.690 kb on + strandat 3206.691 kb on - strandat 3206.691 kb on - strandat 3206.696 kb on + strandat 3206.696 kb on + strandat 3206.696 kb on + strandat 3206.696 kb on + strandat 3206.697 kb on - strandat 3206.697 kb on - strandat 3206.773 kb on - strand, within Psyr_2639at 3206.838 kb on + strand, within Psyr_2639at 3206.839 kb on - strand, within Psyr_2639at 3206.839 kb on - strand, within Psyr_2639at 3206.842 kb on + strand, within Psyr_2639at 3206.842 kb on + strand, within Psyr_2639at 3206.843 kb on - strand, within Psyr_2639at 3206.961 kb on + strand, within Psyr_2639at 3206.962 kb on - strand, within Psyr_2639at 3206.962 kb on - strand, within Psyr_2639at 3206.962 kb on - strand, within Psyr_2639at 3206.981 kb on + strand, within Psyr_2639at 3207.065 kb on + strand, within Psyr_2639at 3207.065 kb on + strand, within Psyr_2639at 3207.065 kb on + strand, within Psyr_2639at 3207.065 kb on + strand, within Psyr_2639at 3207.065 kb on + strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.066 kb on - strand, within Psyr_2639at 3207.082 kb on + strand, within Psyr_2639at 3207.083 kb on - strand, within Psyr_2639at 3207.162 kb on - strandat 3207.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Methyl 6-Hydroxyangolensate 10 mM
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3,204,448 + Psyr_2637 0.51 -0.2
3,204,488 + Psyr_2637 0.54 -2.0
3,204,489 - Psyr_2637 0.54 -1.1
3,204,535 - Psyr_2637 0.57 +0.0
3,204,575 - Psyr_2637 0.60 -0.8
3,204,636 + Psyr_2637 0.65 -0.2
3,204,637 - Psyr_2637 0.65 +0.0
3,204,811 + Psyr_2637 0.78 -0.7
3,204,812 - Psyr_2637 0.78 -0.2
3,204,849 + Psyr_2637 0.81 +1.3
3,204,849 + Psyr_2637 0.81 +1.0
3,204,850 - Psyr_2637 0.81 +1.0
3,204,975 + +0.0
3,204,999 + -1.0
3,205,048 + +1.3
3,205,048 + +0.5
3,205,049 - -1.1
3,205,151 - +0.9
3,205,197 - -0.5
3,205,198 + +0.2
3,205,198 + -0.6
3,205,198 + +0.3
3,205,199 - -0.2
3,205,199 - +1.0
3,205,199 - +2.1
3,205,253 + +0.9
3,205,254 - +0.7
3,205,257 + Psyr_2638 0.10 +2.2
3,205,257 + Psyr_2638 0.10 +2.2
3,205,257 + Psyr_2638 0.10 +0.5
3,205,257 + Psyr_2638 0.10 +0.3
3,205,257 + Psyr_2638 0.10 +0.5
3,205,257 + Psyr_2638 0.10 +0.6
3,205,257 + Psyr_2638 0.10 +1.0
3,205,258 - Psyr_2638 0.10 -1.6
3,205,258 - Psyr_2638 0.10 -3.5
3,205,258 - Psyr_2638 0.10 -0.3
3,205,258 - Psyr_2638 0.10 +0.5
3,205,258 - Psyr_2638 0.10 +2.1
3,205,258 - Psyr_2638 0.10 +0.0
3,205,261 - Psyr_2638 0.10 +1.0
3,205,414 + Psyr_2638 0.25 +0.5
3,205,414 + Psyr_2638 0.25 -0.6
3,205,415 - Psyr_2638 0.25 -2.4
3,205,507 + Psyr_2638 0.33 +0.6
3,205,582 + Psyr_2638 0.40 -0.1
3,205,582 + Psyr_2638 0.40 +1.4
3,205,583 - Psyr_2638 0.41 -0.5
3,205,583 - Psyr_2638 0.41 +0.4
3,205,583 - Psyr_2638 0.41 +0.3
3,205,831 + Psyr_2638 0.64 -0.6
3,205,831 + Psyr_2638 0.64 -0.1
3,205,831 + Psyr_2638 0.64 -0.5
3,205,832 - Psyr_2638 0.64 +0.0
3,205,832 - Psyr_2638 0.64 +0.7
3,205,832 - Psyr_2638 0.64 +1.7
3,205,832 - Psyr_2638 0.64 +0.2
3,205,832 - Psyr_2638 0.64 -1.0
3,205,832 - Psyr_2638 0.64 +0.2
3,205,915 + Psyr_2638 0.72 +0.2
3,205,915 + Psyr_2638 0.72 +0.4
3,205,915 + Psyr_2638 0.72 -1.7
3,205,915 + Psyr_2638 0.72 +0.4
3,205,915 + Psyr_2638 0.72 +0.5
3,205,915 + Psyr_2638 0.72 +1.5
3,205,915 + Psyr_2638 0.72 +1.3
3,205,915 + Psyr_2638 0.72 -0.1
3,205,916 - Psyr_2638 0.72 +0.0
3,205,916 - Psyr_2638 0.72 +1.3
3,205,916 - Psyr_2638 0.72 -0.6
3,205,916 - Psyr_2638 0.72 +0.5
3,205,916 - Psyr_2638 0.72 +0.1
3,205,916 - Psyr_2638 0.72 +0.1
3,205,918 + Psyr_2638 0.72 -0.2
3,205,918 + Psyr_2638 0.72 +0.1
3,205,919 - Psyr_2638 0.72 -1.6
3,205,919 - Psyr_2638 0.72 +0.0
3,205,919 - Psyr_2638 0.72 +0.5
3,205,919 - Psyr_2638 0.72 +0.8
3,205,919 - Psyr_2638 0.72 -0.4
3,205,999 + Psyr_2638 0.79 -0.6
3,206,000 - Psyr_2638 0.79 +2.6
3,206,053 + Psyr_2638 0.84 -2.8
3,206,053 + Psyr_2638 0.84 +0.3
3,206,053 + Psyr_2638 0.84 -0.6
3,206,053 + Psyr_2638 0.84 -0.6
3,206,053 + Psyr_2638 0.84 -0.6
3,206,053 + Psyr_2638 0.84 +0.2
3,206,053 + Psyr_2638 0.84 -0.3
3,206,053 + Psyr_2638 0.84 -0.5
3,206,053 + Psyr_2638 0.84 -0.6
3,206,053 + Psyr_2638 0.84 +1.0
3,206,054 - Psyr_2638 0.85 -1.3
3,206,054 - Psyr_2638 0.85 +0.8
3,206,054 - Psyr_2638 0.85 +0.0
3,206,054 - Psyr_2638 0.85 -0.6
3,206,054 - Psyr_2638 0.85 +0.7
3,206,166 + +0.7
3,206,213 + +0.8
3,206,213 + +0.6
3,206,213 + +0.9
3,206,214 - -0.1
3,206,214 - -1.3
3,206,214 - +0.5
3,206,214 - -0.3
3,206,223 + +1.5
3,206,223 + +0.7
3,206,223 + +0.0
3,206,223 + -0.2
3,206,224 - -2.8
3,206,231 - -0.6
3,206,233 + +0.4
3,206,244 + +1.0
3,206,244 + -0.7
3,206,245 - +0.1
3,206,367 + -1.2
3,206,368 - -0.8
3,206,421 - -0.2
3,206,457 + -0.6
3,206,463 + +0.5
3,206,604 + +0.1
3,206,604 + +0.0
3,206,605 - +0.8
3,206,631 + +0.3
3,206,631 + -0.4
3,206,660 - +0.0
3,206,690 + +0.5
3,206,690 + -0.2
3,206,691 - -1.0
3,206,691 - -0.9
3,206,696 + +0.8
3,206,696 + -0.9
3,206,696 + -0.1
3,206,696 + -1.0
3,206,697 - +0.1
3,206,697 - -2.1
3,206,773 - Psyr_2639 0.15 -0.3
3,206,838 + Psyr_2639 0.29 -1.5
3,206,839 - Psyr_2639 0.30 -2.3
3,206,839 - Psyr_2639 0.30 -2.0
3,206,842 + Psyr_2639 0.30 -0.9
3,206,842 + Psyr_2639 0.30 -1.5
3,206,843 - Psyr_2639 0.31 -1.0
3,206,961 + Psyr_2639 0.56 -0.6
3,206,962 - Psyr_2639 0.56 -0.2
3,206,962 - Psyr_2639 0.56 -0.4
3,206,962 - Psyr_2639 0.56 -0.3
3,206,981 + Psyr_2639 0.60 -0.6
3,207,065 + Psyr_2639 0.78 +0.4
3,207,065 + Psyr_2639 0.78 +0.8
3,207,065 + Psyr_2639 0.78 -0.2
3,207,065 + Psyr_2639 0.78 -1.6
3,207,065 + Psyr_2639 0.78 -1.9
3,207,066 - Psyr_2639 0.78 -0.4
3,207,066 - Psyr_2639 0.78 -3.3
3,207,066 - Psyr_2639 0.78 +0.0
3,207,066 - Psyr_2639 0.78 -0.4
3,207,066 - Psyr_2639 0.78 +1.0
3,207,066 - Psyr_2639 0.78 -0.7
3,207,066 - Psyr_2639 0.78 +0.2
3,207,066 - Psyr_2639 0.78 -0.7
3,207,066 - Psyr_2639 0.78 +0.1
3,207,066 - Psyr_2639 0.78 -0.6
3,207,066 - Psyr_2639 0.78 +0.3
3,207,066 - Psyr_2639 0.78 +0.7
3,207,066 - Psyr_2639 0.78 -3.0
3,207,082 + Psyr_2639 0.82 -0.7
3,207,083 - Psyr_2639 0.82 -1.1
3,207,162 - -1.1
3,207,162 - -0.2

Or see this region's nucleotide sequence