Experiment: KB with Chrysin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3604 and Psyr_3605 are separated by 6 nucleotides Psyr_3605 and Psyr_3606 are separated by 38 nucleotides
Psyr_3604: Psyr_3604 - Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region, at 4,285,891 to 4,287,072
_3604
Psyr_3605: Psyr_3605 - Trimethylamine-N-oxide reductase (cytochrome c), at 4,287,079 to 4,289,349
_3605
Psyr_3606: Psyr_3606 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 4,289,388 to 4,290,359
_3606
Position (kb) 4287
4288
4289
4290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4286.179 kb on + strand, within Psyr_3604 at 4286.180 kb on - strand, within Psyr_3604 at 4286.180 kb on - strand, within Psyr_3604 at 4286.875 kb on + strand, within Psyr_3604 at 4286.876 kb on - strand, within Psyr_3604 at 4287.071 kb on - strand at 4287.071 kb on - strand at 4287.071 kb on - strand at 4287.452 kb on + strand, within Psyr_3605 at 4287.453 kb on - strand, within Psyr_3605 at 4287.569 kb on + strand, within Psyr_3605 at 4287.691 kb on + strand, within Psyr_3605 at 4287.691 kb on + strand, within Psyr_3605 at 4287.691 kb on + strand, within Psyr_3605 at 4287.692 kb on - strand, within Psyr_3605 at 4287.692 kb on - strand, within Psyr_3605 at 4287.692 kb on - strand, within Psyr_3605 at 4287.776 kb on + strand, within Psyr_3605 at 4287.777 kb on - strand, within Psyr_3605 at 4287.777 kb on - strand, within Psyr_3605 at 4287.780 kb on + strand, within Psyr_3605 at 4287.781 kb on - strand, within Psyr_3605 at 4287.781 kb on - strand, within Psyr_3605 at 4287.781 kb on - strand, within Psyr_3605 at 4288.109 kb on + strand, within Psyr_3605 at 4288.110 kb on - strand, within Psyr_3605 at 4288.110 kb on - strand, within Psyr_3605 at 4288.152 kb on - strand, within Psyr_3605 at 4288.165 kb on - strand, within Psyr_3605 at 4288.382 kb on - strand, within Psyr_3605 at 4288.383 kb on + strand, within Psyr_3605 at 4288.383 kb on + strand, within Psyr_3605 at 4288.383 kb on + strand, within Psyr_3605 at 4288.383 kb on + strand, within Psyr_3605 at 4288.383 kb on + strand, within Psyr_3605 at 4288.383 kb on + strand, within Psyr_3605 at 4288.384 kb on - strand, within Psyr_3605 at 4288.384 kb on - strand, within Psyr_3605 at 4288.384 kb on - strand, within Psyr_3605 at 4288.384 kb on - strand, within Psyr_3605 at 4288.384 kb on - strand, within Psyr_3605 at 4288.401 kb on - strand, within Psyr_3605 at 4288.533 kb on - strand, within Psyr_3605 at 4288.550 kb on + strand, within Psyr_3605 at 4288.561 kb on - strand, within Psyr_3605 at 4288.636 kb on - strand, within Psyr_3605 at 4288.669 kb on - strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.863 kb on + strand, within Psyr_3605 at 4288.864 kb on - strand, within Psyr_3605 at 4288.864 kb on - strand, within Psyr_3605 at 4288.934 kb on + strand, within Psyr_3605 at 4288.934 kb on + strand, within Psyr_3605 at 4288.935 kb on - strand, within Psyr_3605 at 4288.955 kb on + strand, within Psyr_3605 at 4288.972 kb on - strand, within Psyr_3605 at 4289.046 kb on + strand, within Psyr_3605 at 4289.221 kb on - strand at 4289.221 kb on - strand at 4289.394 kb on + strand at 4289.394 kb on + strand at 4289.806 kb on + strand, within Psyr_3606 at 4289.806 kb on + strand, within Psyr_3606 at 4289.807 kb on - strand, within Psyr_3606 at 4289.820 kb on - strand, within Psyr_3606 at 4290.126 kb on - strand, within Psyr_3606 at 4290.196 kb on + strand, within Psyr_3606 at 4290.196 kb on + strand, within Psyr_3606 at 4290.197 kb on - strand, within Psyr_3606 at 4290.197 kb on - strand, within Psyr_3606 at 4290.201 kb on + strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.202 kb on - strand, within Psyr_3606 at 4290.248 kb on - strand, within Psyr_3606
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chrysin 10 mM remove 4,286,179 + Psyr_3604 0.24 +0.2 4,286,180 - Psyr_3604 0.24 -0.9 4,286,180 - Psyr_3604 0.24 -1.5 4,286,875 + Psyr_3604 0.83 +0.2 4,286,876 - Psyr_3604 0.83 -1.1 4,287,071 - +0.3 4,287,071 - +0.8 4,287,071 - +0.1 4,287,452 + Psyr_3605 0.16 -0.8 4,287,453 - Psyr_3605 0.16 +0.0 4,287,569 + Psyr_3605 0.22 -1.5 4,287,691 + Psyr_3605 0.27 -0.0 4,287,691 + Psyr_3605 0.27 -0.6 4,287,691 + Psyr_3605 0.27 -0.9 4,287,692 - Psyr_3605 0.27 -2.9 4,287,692 - Psyr_3605 0.27 +0.1 4,287,692 - Psyr_3605 0.27 +0.3 4,287,776 + Psyr_3605 0.31 -0.5 4,287,777 - Psyr_3605 0.31 +0.5 4,287,777 - Psyr_3605 0.31 +1.9 4,287,780 + Psyr_3605 0.31 -0.5 4,287,781 - Psyr_3605 0.31 -0.5 4,287,781 - Psyr_3605 0.31 +0.1 4,287,781 - Psyr_3605 0.31 +0.0 4,288,109 + Psyr_3605 0.45 -0.3 4,288,110 - Psyr_3605 0.45 +0.3 4,288,110 - Psyr_3605 0.45 +0.1 4,288,152 - Psyr_3605 0.47 -1.2 4,288,165 - Psyr_3605 0.48 +0.1 4,288,382 - Psyr_3605 0.57 +0.2 4,288,383 + Psyr_3605 0.57 +1.0 4,288,383 + Psyr_3605 0.57 -0.4 4,288,383 + Psyr_3605 0.57 -0.6 4,288,383 + Psyr_3605 0.57 -0.7 4,288,383 + Psyr_3605 0.57 -0.1 4,288,383 + Psyr_3605 0.57 +0.3 4,288,384 - Psyr_3605 0.57 +0.3 4,288,384 - Psyr_3605 0.57 -0.7 4,288,384 - Psyr_3605 0.57 +1.5 4,288,384 - Psyr_3605 0.57 +0.3 4,288,384 - Psyr_3605 0.57 -1.4 4,288,401 - Psyr_3605 0.58 -1.0 4,288,533 - Psyr_3605 0.64 -0.5 4,288,550 + Psyr_3605 0.65 +0.1 4,288,561 - Psyr_3605 0.65 -0.4 4,288,636 - Psyr_3605 0.69 -0.3 4,288,669 - Psyr_3605 0.70 +0.2 4,288,863 + Psyr_3605 0.79 +0.4 4,288,863 + Psyr_3605 0.79 -1.2 4,288,863 + Psyr_3605 0.79 -0.4 4,288,864 - Psyr_3605 0.79 -0.2 4,288,864 - Psyr_3605 0.79 -0.2 4,288,934 + Psyr_3605 0.82 -0.4 4,288,934 + Psyr_3605 0.82 +0.3 4,288,935 - Psyr_3605 0.82 +0.1 4,288,955 + Psyr_3605 0.83 -0.4 4,288,972 - Psyr_3605 0.83 +0.1 4,289,046 + Psyr_3605 0.87 -1.6 4,289,221 - -0.7 4,289,221 - +0.5 4,289,394 + -0.0 4,289,394 + -0.6 4,289,806 + Psyr_3606 0.43 +1.8 4,289,806 + Psyr_3606 0.43 -0.0 4,289,807 - Psyr_3606 0.43 +0.6 4,289,820 - Psyr_3606 0.44 -0.3 4,290,126 - Psyr_3606 0.76 +1.0 4,290,196 + Psyr_3606 0.83 +1.1 4,290,196 + Psyr_3606 0.83 -1.4 4,290,197 - Psyr_3606 0.83 -1.7 4,290,197 - Psyr_3606 0.83 +0.1 4,290,201 + Psyr_3606 0.84 -0.5 4,290,202 - Psyr_3606 0.84 -0.1 4,290,202 - Psyr_3606 0.84 +0.1 4,290,202 - Psyr_3606 0.84 +0.1 4,290,202 - Psyr_3606 0.84 -0.3 4,290,248 - Psyr_3606 0.88 -0.8
Or see this region's nucleotide sequence