Experiment: Ferric citrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napA and napD overlap by 4 nucleotides napD and SO0850 are separated by 509 nucleotides SO0850 and SO0851 are separated by 15 nucleotides SO0851 and SO0852 overlap by 13 nucleotides SO0852 and SO0853 overlap by 10 nucleotides
SO0848: napA - periplasmic nitrate reductase (NCBI ptt file), at 869,029 to 871,509
napA
SO0849: napD - napD protein (NCBI ptt file), at 871,506 to 871,790
napD
SO0850: SO0850 - hypothetical protein (NCBI ptt file), at 872,300 to 873,928
SO0850
SO0851: SO0851 - hypothetical protein (NCBI ptt file), at 873,944 to 874,501
SO0851
SO0852: SO0852 - hypothetical protein (NCBI ptt file), at 874,489 to 874,896
SO0852
SO0853: SO0853 - pilin, putative (NCBI ptt file), at 874,887 to 875,321
SO0853
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 871.332 kb on + strand at 871.359 kb on - strand at 871.381 kb on - strand at 871.409 kb on - strand at 871.519 kb on - strand at 871.519 kb on - strand at 871.662 kb on - strand, within napD at 871.728 kb on - strand, within napD at 871.738 kb on - strand, within napD at 871.745 kb on - strand, within napD at 871.867 kb on + strand at 871.875 kb on - strand at 872.039 kb on - strand at 872.039 kb on - strand at 872.039 kb on - strand at 872.348 kb on + strand at 872.348 kb on + strand at 872.356 kb on - strand at 872.356 kb on - strand at 872.431 kb on - strand at 872.454 kb on + strand at 872.518 kb on + strand, within SO0850 at 872.634 kb on - strand, within SO0850 at 872.669 kb on - strand, within SO0850 at 872.673 kb on + strand, within SO0850 at 872.674 kb on + strand, within SO0850 at 872.681 kb on - strand, within SO0850 at 872.681 kb on - strand, within SO0850 at 872.724 kb on - strand, within SO0850 at 872.724 kb on - strand, within SO0850 at 872.725 kb on - strand, within SO0850 at 872.767 kb on + strand, within SO0850 at 872.827 kb on + strand, within SO0850 at 872.827 kb on + strand, within SO0850 at 872.827 kb on + strand, within SO0850 at 872.827 kb on + strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.835 kb on - strand, within SO0850 at 872.872 kb on + strand, within SO0850 at 872.880 kb on - strand, within SO0850 at 872.895 kb on - strand, within SO0850 at 872.941 kb on + strand, within SO0850 at 873.018 kb on + strand, within SO0850 at 873.018 kb on + strand, within SO0850 at 873.018 kb on + strand, within SO0850 at 873.071 kb on + strand, within SO0850 at 873.071 kb on + strand, within SO0850 at 873.084 kb on + strand, within SO0850 at 873.092 kb on - strand, within SO0850 at 873.202 kb on + strand, within SO0850 at 873.340 kb on + strand, within SO0850 at 873.348 kb on - strand, within SO0850 at 873.348 kb on - strand, within SO0850 at 873.384 kb on + strand, within SO0850 at 873.431 kb on - strand, within SO0850 at 873.484 kb on + strand, within SO0850 at 873.545 kb on + strand, within SO0850 at 873.576 kb on + strand, within SO0850 at 873.623 kb on + strand, within SO0850 at 873.625 kb on - strand, within SO0850 at 873.656 kb on - strand, within SO0850 at 873.751 kb on + strand, within SO0850 at 873.764 kb on - strand, within SO0850 at 873.822 kb on - strand at 873.875 kb on + strand at 873.984 kb on + strand at 873.992 kb on - strand at 873.994 kb on + strand at 874.007 kb on - strand, within SO0851 at 874.044 kb on + strand, within SO0851 at 874.139 kb on + strand, within SO0851 at 874.139 kb on + strand, within SO0851 at 874.147 kb on - strand, within SO0851 at 874.214 kb on + strand, within SO0851 at 874.214 kb on + strand, within SO0851 at 874.227 kb on - strand, within SO0851 at 874.438 kb on + strand, within SO0851 at 874.473 kb on + strand at 874.493 kb on + strand at 874.534 kb on + strand, within SO0852 at 874.595 kb on + strand, within SO0852 at 874.595 kb on + strand, within SO0852 at 874.595 kb on + strand, within SO0852 at 874.595 kb on + strand, within SO0852 at 874.603 kb on - strand, within SO0852 at 874.603 kb on - strand, within SO0852 at 874.795 kb on - strand, within SO0852 at 874.809 kb on + strand, within SO0852 at 874.809 kb on + strand, within SO0852 at 874.854 kb on + strand, within SO0852
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor remove 871,332 + -2.4 871,359 - +0.5 871,381 - +0.0 871,409 - -0.1 871,519 - -0.9 871,519 - +0.2 871,662 - napD SO0849 0.55 +1.2 871,728 - napD SO0849 0.78 +0.7 871,738 - napD SO0849 0.81 -0.8 871,745 - napD SO0849 0.84 +0.5 871,867 + -1.9 871,875 - +0.5 872,039 - +1.5 872,039 - -0.8 872,039 - -0.1 872,348 + -0.3 872,348 + -0.4 872,356 - -1.1 872,356 - +0.2 872,431 - -1.1 872,454 + -0.9 872,518 + SO0850 0.13 +0.1 872,634 - SO0850 0.21 -0.1 872,669 - SO0850 0.23 -0.9 872,673 + SO0850 0.23 -0.3 872,674 + SO0850 0.23 -1.1 872,681 - SO0850 0.23 -1.1 872,681 - SO0850 0.23 +0.1 872,724 - SO0850 0.26 +0.1 872,724 - SO0850 0.26 -0.0 872,725 - SO0850 0.26 -1.0 872,767 + SO0850 0.29 -0.3 872,827 + SO0850 0.32 +0.6 872,827 + SO0850 0.32 +1.6 872,827 + SO0850 0.32 -0.9 872,827 + SO0850 0.32 +0.8 872,835 - SO0850 0.33 -0.5 872,835 - SO0850 0.33 -0.1 872,835 - SO0850 0.33 +0.4 872,835 - SO0850 0.33 +0.2 872,835 - SO0850 0.33 -0.6 872,835 - SO0850 0.33 -1.0 872,835 - SO0850 0.33 +2.1 872,835 - SO0850 0.33 +0.9 872,835 - SO0850 0.33 -0.2 872,835 - SO0850 0.33 +1.1 872,835 - SO0850 0.33 +1.6 872,835 - SO0850 0.33 +4.0 872,835 - SO0850 0.33 -1.8 872,872 + SO0850 0.35 -1.4 872,880 - SO0850 0.36 -1.2 872,895 - SO0850 0.37 -0.3 872,941 + SO0850 0.39 +0.1 873,018 + SO0850 0.44 +0.7 873,018 + SO0850 0.44 +2.1 873,018 + SO0850 0.44 +0.7 873,071 + SO0850 0.47 -1.8 873,071 + SO0850 0.47 +0.2 873,084 + SO0850 0.48 +0.6 873,092 - SO0850 0.49 +1.1 873,202 + SO0850 0.55 -0.3 873,340 + SO0850 0.64 -0.9 873,348 - SO0850 0.64 -2.1 873,348 - SO0850 0.64 +0.7 873,384 + SO0850 0.67 -0.9 873,431 - SO0850 0.69 +0.2 873,484 + SO0850 0.73 +1.2 873,545 + SO0850 0.76 -0.1 873,576 + SO0850 0.78 -0.4 873,623 + SO0850 0.81 -1.4 873,625 - SO0850 0.81 +2.2 873,656 - SO0850 0.83 -0.7 873,751 + SO0850 0.89 +0.3 873,764 - SO0850 0.90 +1.7 873,822 - +0.4 873,875 + +0.8 873,984 + +2.1 873,992 - +0.2 873,994 + +1.2 874,007 - SO0851 0.11 -0.4 874,044 + SO0851 0.18 -1.5 874,139 + SO0851 0.35 -1.1 874,139 + SO0851 0.35 +1.0 874,147 - SO0851 0.36 +1.1 874,214 + SO0851 0.48 +0.6 874,214 + SO0851 0.48 +0.9 874,227 - SO0851 0.51 +0.8 874,438 + SO0851 0.89 -0.6 874,473 + -0.9 874,493 + +0.8 874,534 + SO0852 0.11 -1.3 874,595 + SO0852 0.26 -1.9 874,595 + SO0852 0.26 +0.2 874,595 + SO0852 0.26 -0.2 874,595 + SO0852 0.26 -1.6 874,603 - SO0852 0.28 +0.2 874,603 - SO0852 0.28 +1.2 874,795 - SO0852 0.75 -1.5 874,809 + SO0852 0.78 -0.8 874,809 + SO0852 0.78 -0.0 874,854 + SO0852 0.89 -0.1
Or see this region's nucleotide sequence