Experiment: Ferric citrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0796 and SO0797 are separated by 254 nucleotides SO0797 and SO0798 overlap by 1 nucleotides SO0798 and SO0799 are separated by 149 nucleotides SO0799 and SO0801 are separated by 146 nucleotides
SO0796: SO0796 - GGDEF family protein (NCBI ptt file), at 808,860 to 809,771
SO0796
SO0797: SO0797 - hypothetical protein (NCBI ptt file), at 810,026 to 810,487
SO0797
SO0798: SO0798 - conserved hypothetical protein (NCBI ptt file), at 810,487 to 812,649
SO0798
SO0799: SO0799 - conserved hypothetical protein (NCBI ptt file), at 812,799 to 813,281
SO0799
SO0801: SO0801 - conserved hypothetical protein (NCBI ptt file), at 813,428 to 814,342
SO0801
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 809.496 kb on + strand, within SO0796 at 809.583 kb on + strand, within SO0796 at 809.806 kb on + strand at 809.814 kb on - strand at 809.818 kb on - strand at 809.890 kb on + strand at 809.898 kb on - strand at 809.898 kb on - strand at 809.899 kb on + strand at 809.944 kb on + strand at 810.017 kb on + strand at 810.031 kb on - strand at 810.122 kb on + strand, within SO0797 at 810.307 kb on + strand, within SO0797 at 810.332 kb on - strand, within SO0797 at 810.410 kb on - strand, within SO0797 at 810.428 kb on - strand, within SO0797 at 810.450 kb on + strand at 810.610 kb on - strand at 810.630 kb on + strand at 810.630 kb on + strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.638 kb on - strand at 810.696 kb on - strand at 810.754 kb on + strand, within SO0798 at 810.754 kb on + strand, within SO0798 at 810.754 kb on + strand, within SO0798 at 810.762 kb on - strand, within SO0798 at 810.762 kb on - strand, within SO0798 at 810.844 kb on - strand, within SO0798 at 810.923 kb on + strand, within SO0798 at 810.924 kb on - strand, within SO0798 at 810.930 kb on + strand, within SO0798 at 810.938 kb on - strand, within SO0798 at 810.938 kb on - strand, within SO0798 at 810.938 kb on - strand, within SO0798 at 810.938 kb on - strand, within SO0798 at 811.096 kb on + strand, within SO0798 at 811.096 kb on + strand, within SO0798 at 811.114 kb on - strand, within SO0798 at 811.148 kb on - strand, within SO0798 at 811.210 kb on + strand, within SO0798 at 811.210 kb on + strand, within SO0798 at 811.210 kb on + strand, within SO0798 at 811.210 kb on + strand, within SO0798 at 811.218 kb on - strand, within SO0798 at 811.218 kb on - strand, within SO0798 at 811.281 kb on + strand, within SO0798 at 811.287 kb on + strand, within SO0798 at 811.288 kb on - strand, within SO0798 at 811.317 kb on - strand, within SO0798 at 811.369 kb on - strand, within SO0798 at 811.369 kb on - strand, within SO0798 at 811.518 kb on - strand, within SO0798 at 811.556 kb on + strand, within SO0798 at 811.640 kb on + strand, within SO0798 at 811.718 kb on + strand, within SO0798 at 811.828 kb on + strand, within SO0798 at 811.857 kb on + strand, within SO0798 at 811.872 kb on - strand, within SO0798 at 811.878 kb on - strand, within SO0798 at 811.923 kb on - strand, within SO0798 at 812.082 kb on + strand, within SO0798 at 812.160 kb on + strand, within SO0798 at 812.160 kb on + strand, within SO0798 at 812.160 kb on + strand, within SO0798 at 812.160 kb on + strand, within SO0798 at 812.168 kb on - strand, within SO0798 at 812.168 kb on - strand, within SO0798 at 812.305 kb on + strand, within SO0798 at 812.364 kb on + strand, within SO0798 at 812.397 kb on + strand, within SO0798 at 812.397 kb on + strand, within SO0798 at 812.482 kb on + strand at 812.514 kb on + strand at 812.514 kb on + strand at 812.522 kb on - strand at 812.529 kb on - strand at 812.876 kb on - strand, within SO0799 at 812.910 kb on - strand, within SO0799 at 813.065 kb on + strand, within SO0799 at 813.068 kb on - strand, within SO0799 at 813.160 kb on + strand, within SO0799 at 813.160 kb on + strand, within SO0799 at 813.165 kb on - strand, within SO0799 at 813.165 kb on - strand, within SO0799 at 813.168 kb on - strand, within SO0799 at 813.168 kb on - strand, within SO0799 at 813.198 kb on - strand, within SO0799 at 813.236 kb on + strand at 813.236 kb on + strand at 813.244 kb on - strand at 813.244 kb on - strand at 813.305 kb on - strand at 813.342 kb on - strand at 813.388 kb on + strand at 813.396 kb on - strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.514 kb on + strand at 813.522 kb on - strand, within SO0801 at 813.522 kb on - strand, within SO0801 at 813.522 kb on - strand, within SO0801 at 813.522 kb on - strand, within SO0801 at 813.522 kb on - strand, within SO0801 at 813.602 kb on - strand, within SO0801 at 813.639 kb on - strand, within SO0801
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor remove 809,496 + SO0796 0.70 -0.0 809,583 + SO0796 0.79 +1.6 809,806 + +1.0 809,814 - -2.6 809,818 - +2.7 809,890 + -0.3 809,898 - -1.6 809,898 - -0.9 809,899 + -2.0 809,944 + +2.0 810,017 + -2.4 810,031 - -0.3 810,122 + SO0797 0.21 +0.7 810,307 + SO0797 0.61 -0.5 810,332 - SO0797 0.66 +1.6 810,410 - SO0797 0.83 -0.7 810,428 - SO0797 0.87 -0.7 810,450 + -1.1 810,610 - +0.9 810,630 + -0.6 810,630 + -0.1 810,638 - +0.1 810,638 - -1.2 810,638 - -0.0 810,638 - -1.6 810,696 - +0.4 810,754 + SO0798 0.12 -2.4 810,754 + SO0798 0.12 +1.6 810,754 + SO0798 0.12 +0.1 810,762 - SO0798 0.13 -1.1 810,762 - SO0798 0.13 +0.0 810,844 - SO0798 0.17 -0.1 810,923 + SO0798 0.20 +2.3 810,924 - SO0798 0.20 -0.1 810,930 + SO0798 0.20 +0.4 810,938 - SO0798 0.21 -0.6 810,938 - SO0798 0.21 -0.1 810,938 - SO0798 0.21 -0.8 810,938 - SO0798 0.21 +0.1 811,096 + SO0798 0.28 -0.5 811,096 + SO0798 0.28 -2.0 811,114 - SO0798 0.29 +0.5 811,148 - SO0798 0.31 -1.8 811,210 + SO0798 0.33 -1.2 811,210 + SO0798 0.33 +0.1 811,210 + SO0798 0.33 -2.5 811,210 + SO0798 0.33 +0.2 811,218 - SO0798 0.34 -2.9 811,218 - SO0798 0.34 -1.6 811,281 + SO0798 0.37 +0.3 811,287 + SO0798 0.37 -0.9 811,288 - SO0798 0.37 +0.0 811,317 - SO0798 0.38 -1.1 811,369 - SO0798 0.41 -0.0 811,369 - SO0798 0.41 -1.4 811,518 - SO0798 0.48 +0.6 811,556 + SO0798 0.49 -2.6 811,640 + SO0798 0.53 -0.7 811,718 + SO0798 0.57 +0.5 811,828 + SO0798 0.62 +0.3 811,857 + SO0798 0.63 +0.0 811,872 - SO0798 0.64 -1.1 811,878 - SO0798 0.64 +1.1 811,923 - SO0798 0.66 -1.5 812,082 + SO0798 0.74 +0.1 812,160 + SO0798 0.77 -1.4 812,160 + SO0798 0.77 -1.1 812,160 + SO0798 0.77 +0.9 812,160 + SO0798 0.77 +0.3 812,168 - SO0798 0.78 -0.7 812,168 - SO0798 0.78 -1.5 812,305 + SO0798 0.84 +3.3 812,364 + SO0798 0.87 +0.2 812,397 + SO0798 0.88 -0.6 812,397 + SO0798 0.88 -2.5 812,482 + +0.4 812,514 + -0.3 812,514 + -1.6 812,522 - +1.3 812,529 - +0.4 812,876 - SO0799 0.16 -2.2 812,910 - SO0799 0.23 -0.8 813,065 + SO0799 0.55 -0.1 813,068 - SO0799 0.56 -0.9 813,160 + SO0799 0.75 +0.5 813,160 + SO0799 0.75 +0.7 813,165 - SO0799 0.76 -1.1 813,165 - SO0799 0.76 -1.1 813,168 - SO0799 0.76 -1.5 813,168 - SO0799 0.76 +0.9 813,198 - SO0799 0.83 +2.6 813,236 + +0.2 813,236 + -0.8 813,244 - +0.1 813,244 - +2.1 813,305 - +0.7 813,342 - -0.1 813,388 + +1.2 813,396 - +0.6 813,514 + -0.8 813,514 + +1.5 813,514 + -2.1 813,514 + -0.8 813,514 + +3.5 813,514 + -0.1 813,522 - SO0801 0.10 -1.9 813,522 - SO0801 0.10 +0.3 813,522 - SO0801 0.10 -0.0 813,522 - SO0801 0.10 +2.1 813,522 - SO0801 0.10 +0.2 813,602 - SO0801 0.19 -0.5 813,639 - SO0801 0.23 +1.8
Or see this region's nucleotide sequence