Experiment: KB with Theaflavin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4284 and Psyr_4285 overlap by 4 nucleotides Psyr_4285 and Psyr_4286 are separated by 265 nucleotides Psyr_4286 and Psyr_4287 overlap by 4 nucleotides
Psyr_4284: Psyr_4284 - Molybdopterin dehydrogenase, FAD-binding:CO dehydrogenase flavoprotein, C-terminal, at 5,109,718 to 5,110,707
_4284
Psyr_4285: Psyr_4285 - Ferredoxin:[2Fe-2S]-binding protein, at 5,110,704 to 5,111,234
_4285
Psyr_4286: Psyr_4286 - Xanthine/uracil/vitamin C permease, at 5,111,500 to 5,112,795
_4286
Psyr_4287: Psyr_4287 - tRNA (uracil-5-)-methyltransferase, at 5,112,792 to 5,113,877
_4287
Position (kb) 5111
5112
5113 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.691 kb on + strand at 5110.692 kb on - strand at 5110.692 kb on - strand at 5110.692 kb on - strand at 5110.696 kb on - strand at 5110.696 kb on - strand at 5110.775 kb on + strand, within Psyr_4285 at 5110.775 kb on + strand, within Psyr_4285 at 5110.776 kb on - strand, within Psyr_4285 at 5110.784 kb on - strand, within Psyr_4285 at 5111.049 kb on + strand, within Psyr_4285 at 5111.261 kb on - strand at 5111.272 kb on + strand at 5111.272 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.333 kb on + strand at 5111.334 kb on - strand at 5111.334 kb on - strand at 5111.334 kb on - strand at 5111.334 kb on - strand at 5111.387 kb on + strand at 5111.387 kb on + strand at 5111.388 kb on - strand at 5111.388 kb on - strand at 5111.388 kb on - strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.590 kb on + strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.591 kb on - strand at 5111.754 kb on + strand, within Psyr_4286 at 5111.754 kb on + strand, within Psyr_4286 at 5111.754 kb on + strand, within Psyr_4286 at 5111.755 kb on - strand, within Psyr_4286 at 5111.758 kb on + strand, within Psyr_4286 at 5111.758 kb on + strand, within Psyr_4286 at 5111.758 kb on + strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.759 kb on - strand, within Psyr_4286 at 5111.795 kb on + strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.875 kb on - strand, within Psyr_4286 at 5111.955 kb on + strand, within Psyr_4286 at 5112.058 kb on + strand, within Psyr_4286 at 5112.058 kb on + strand, within Psyr_4286 at 5112.059 kb on - strand, within Psyr_4286 at 5112.357 kb on + strand, within Psyr_4286 at 5112.358 kb on - strand, within Psyr_4286 at 5112.358 kb on - strand, within Psyr_4286 at 5112.406 kb on + strand, within Psyr_4286 at 5112.406 kb on + strand, within Psyr_4286 at 5112.406 kb on + strand, within Psyr_4286 at 5112.407 kb on - strand, within Psyr_4286 at 5112.620 kb on + strand, within Psyr_4286 at 5112.621 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.653 kb on - strand, within Psyr_4286 at 5112.820 kb on - strand at 5112.820 kb on - strand at 5112.918 kb on + strand, within Psyr_4287 at 5112.918 kb on + strand, within Psyr_4287 at 5112.918 kb on + strand, within Psyr_4287 at 5112.919 kb on - strand, within Psyr_4287 at 5112.919 kb on - strand, within Psyr_4287 at 5112.919 kb on - strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.920 kb on + strand, within Psyr_4287 at 5112.921 kb on - strand, within Psyr_4287 at 5112.921 kb on - strand, within Psyr_4287 at 5112.921 kb on - strand, within Psyr_4287 at 5112.921 kb on - strand, within Psyr_4287 at 5112.970 kb on - strand, within Psyr_4287 at 5112.970 kb on - strand, within Psyr_4287 at 5113.041 kb on - strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.275 kb on + strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.276 kb on - strand, within Psyr_4287 at 5113.428 kb on + strand, within Psyr_4287 at 5113.463 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.647 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.737 kb on + strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.738 kb on - strand, within Psyr_4287 at 5113.741 kb on + strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287 at 5113.742 kb on - strand, within Psyr_4287
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Theaflavin 10 mM remove 5,110,691 + -0.2 5,110,691 + -0.7 5,110,691 + -2.6 5,110,691 + -0.3 5,110,692 - +0.0 5,110,692 - +0.1 5,110,692 - -0.3 5,110,696 - +0.8 5,110,696 - +0.7 5,110,775 + Psyr_4285 0.13 -0.9 5,110,775 + Psyr_4285 0.13 -0.4 5,110,776 - Psyr_4285 0.14 -0.9 5,110,784 - Psyr_4285 0.15 +1.1 5,111,049 + Psyr_4285 0.65 -0.3 5,111,261 - +1.0 5,111,272 + +0.0 5,111,272 + -1.9 5,111,333 + +0.6 5,111,333 + +0.2 5,111,333 + -0.3 5,111,333 + +0.9 5,111,333 + -0.7 5,111,333 + -0.0 5,111,333 + -0.7 5,111,334 - +0.1 5,111,334 - -1.7 5,111,334 - +0.8 5,111,334 - -0.6 5,111,387 + -0.3 5,111,387 + -1.3 5,111,388 - -0.1 5,111,388 - +0.3 5,111,388 - +0.3 5,111,590 + +1.0 5,111,590 + +0.1 5,111,590 + -0.5 5,111,590 + -0.4 5,111,590 + -1.2 5,111,590 + +0.1 5,111,590 + -2.3 5,111,590 + -0.6 5,111,591 - -1.1 5,111,591 - -1.4 5,111,591 - -0.9 5,111,591 - -1.2 5,111,591 - +0.6 5,111,591 - -0.5 5,111,591 - +0.3 5,111,754 + Psyr_4286 0.20 +0.1 5,111,754 + Psyr_4286 0.20 -0.1 5,111,754 + Psyr_4286 0.20 -0.3 5,111,755 - Psyr_4286 0.20 -1.6 5,111,758 + Psyr_4286 0.20 +0.0 5,111,758 + Psyr_4286 0.20 -0.4 5,111,758 + Psyr_4286 0.20 -0.9 5,111,759 - Psyr_4286 0.20 -0.4 5,111,759 - Psyr_4286 0.20 +0.5 5,111,759 - Psyr_4286 0.20 +0.6 5,111,759 - Psyr_4286 0.20 -2.2 5,111,759 - Psyr_4286 0.20 +0.1 5,111,795 + Psyr_4286 0.23 -0.7 5,111,875 - Psyr_4286 0.29 -1.4 5,111,875 - Psyr_4286 0.29 -0.9 5,111,875 - Psyr_4286 0.29 -1.4 5,111,955 + Psyr_4286 0.35 -0.9 5,112,058 + Psyr_4286 0.43 +0.9 5,112,058 + Psyr_4286 0.43 -0.9 5,112,059 - Psyr_4286 0.43 +0.2 5,112,357 + Psyr_4286 0.66 -0.9 5,112,358 - Psyr_4286 0.66 -0.4 5,112,358 - Psyr_4286 0.66 +0.2 5,112,406 + Psyr_4286 0.70 +0.1 5,112,406 + Psyr_4286 0.70 -0.6 5,112,406 + Psyr_4286 0.70 -0.7 5,112,407 - Psyr_4286 0.70 -0.4 5,112,620 + Psyr_4286 0.86 +1.1 5,112,621 - Psyr_4286 0.86 -0.7 5,112,653 - Psyr_4286 0.89 +1.3 5,112,653 - Psyr_4286 0.89 -0.2 5,112,653 - Psyr_4286 0.89 -0.7 5,112,653 - Psyr_4286 0.89 +0.0 5,112,653 - Psyr_4286 0.89 -0.3 5,112,820 - -1.7 5,112,820 - -0.6 5,112,918 + Psyr_4287 0.12 +0.1 5,112,918 + Psyr_4287 0.12 -0.5 5,112,918 + Psyr_4287 0.12 -0.1 5,112,919 - Psyr_4287 0.12 -1.3 5,112,919 - Psyr_4287 0.12 -1.1 5,112,919 - Psyr_4287 0.12 -0.1 5,112,920 + Psyr_4287 0.12 +0.3 5,112,920 + Psyr_4287 0.12 -0.2 5,112,920 + Psyr_4287 0.12 -1.0 5,112,920 + Psyr_4287 0.12 +0.0 5,112,920 + Psyr_4287 0.12 +0.1 5,112,920 + Psyr_4287 0.12 +0.0 5,112,921 - Psyr_4287 0.12 +0.1 5,112,921 - Psyr_4287 0.12 -2.3 5,112,921 - Psyr_4287 0.12 -1.9 5,112,921 - Psyr_4287 0.12 -0.7 5,112,970 - Psyr_4287 0.16 -0.2 5,112,970 - Psyr_4287 0.16 -0.0 5,113,041 - Psyr_4287 0.23 +0.2 5,113,275 + Psyr_4287 0.44 -1.6 5,113,275 + Psyr_4287 0.44 -1.2 5,113,275 + Psyr_4287 0.44 -0.0 5,113,275 + Psyr_4287 0.44 -0.7 5,113,275 + Psyr_4287 0.44 -1.3 5,113,275 + Psyr_4287 0.44 -0.1 5,113,275 + Psyr_4287 0.44 +0.9 5,113,275 + Psyr_4287 0.44 +0.2 5,113,275 + Psyr_4287 0.44 -2.6 5,113,275 + Psyr_4287 0.44 -0.5 5,113,276 - Psyr_4287 0.45 +0.1 5,113,276 - Psyr_4287 0.45 -2.3 5,113,276 - Psyr_4287 0.45 +0.5 5,113,276 - Psyr_4287 0.45 -0.7 5,113,276 - Psyr_4287 0.45 +0.2 5,113,276 - Psyr_4287 0.45 +0.2 5,113,428 + Psyr_4287 0.59 -0.2 5,113,463 + Psyr_4287 0.62 -1.3 5,113,647 + Psyr_4287 0.79 +2.6 5,113,647 + Psyr_4287 0.79 -1.0 5,113,647 + Psyr_4287 0.79 -1.2 5,113,647 + Psyr_4287 0.79 -0.7 5,113,647 + Psyr_4287 0.79 -0.1 5,113,737 + Psyr_4287 0.87 -1.4 5,113,737 + Psyr_4287 0.87 -0.7 5,113,737 + Psyr_4287 0.87 -0.7 5,113,737 + Psyr_4287 0.87 -0.3 5,113,737 + Psyr_4287 0.87 +0.1 5,113,738 - Psyr_4287 0.87 -0.1 5,113,738 - Psyr_4287 0.87 -0.6 5,113,738 - Psyr_4287 0.87 +1.4 5,113,738 - Psyr_4287 0.87 +0.1 5,113,738 - Psyr_4287 0.87 -0.4 5,113,738 - Psyr_4287 0.87 -0.6 5,113,738 - Psyr_4287 0.87 +0.0 5,113,738 - Psyr_4287 0.87 -1.2 5,113,738 - Psyr_4287 0.87 -2.4 5,113,741 + Psyr_4287 0.87 +0.1 5,113,742 - Psyr_4287 0.87 +0.1 5,113,742 - Psyr_4287 0.87 -0.4 5,113,742 - Psyr_4287 0.87 -1.8 5,113,742 - Psyr_4287 0.87 -1.1 5,113,742 - Psyr_4287 0.87 -0.4
Or see this region's nucleotide sequence