Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2793

Experiment: KB with Theaflavin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2792 and Psyr_2793 overlap by 26 nucleotidesPsyr_2793 and Psyr_2794 overlap by 4 nucleotides Psyr_2792: Psyr_2792 - Phage putative head morphogenesis protein, SPP1 gp7, at 3,374,929 to 3,376,017 _2792 Psyr_2793: Psyr_2793 - hypothetical protein, at 3,375,992 to 3,377,413 _2793 Psyr_2794: Psyr_2794 - Protein of unknown function DUF264, at 3,377,410 to 3,378,711 _2794 Position (kb) 3375 3376 3377 3378Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3375.004 kb on - strandat 3375.011 kb on - strandat 3375.034 kb on + strandat 3375.034 kb on + strandat 3375.035 kb on - strandat 3375.035 kb on - strandat 3375.125 kb on + strand, within Psyr_2792at 3375.125 kb on + strand, within Psyr_2792at 3375.126 kb on - strand, within Psyr_2792at 3375.126 kb on - strand, within Psyr_2792at 3375.128 kb on + strand, within Psyr_2792at 3375.128 kb on + strand, within Psyr_2792at 3375.129 kb on - strand, within Psyr_2792at 3375.129 kb on - strand, within Psyr_2792at 3375.303 kb on + strand, within Psyr_2792at 3375.303 kb on + strand, within Psyr_2792at 3375.303 kb on + strand, within Psyr_2792at 3375.304 kb on - strand, within Psyr_2792at 3375.428 kb on - strand, within Psyr_2792at 3375.473 kb on + strand, within Psyr_2792at 3375.699 kb on + strand, within Psyr_2792at 3375.752 kb on + strand, within Psyr_2792at 3375.752 kb on + strand, within Psyr_2792at 3375.753 kb on - strand, within Psyr_2792at 3375.753 kb on - strand, within Psyr_2792at 3375.792 kb on + strand, within Psyr_2792at 3375.792 kb on + strand, within Psyr_2792at 3375.795 kb on - strand, within Psyr_2792at 3375.864 kb on - strand, within Psyr_2792at 3376.022 kb on + strandat 3376.129 kb on - strandat 3376.169 kb on + strand, within Psyr_2793at 3376.169 kb on + strand, within Psyr_2793at 3376.169 kb on + strand, within Psyr_2793at 3376.294 kb on - strand, within Psyr_2793at 3376.459 kb on + strand, within Psyr_2793at 3376.460 kb on - strand, within Psyr_2793at 3376.527 kb on - strand, within Psyr_2793at 3376.527 kb on - strand, within Psyr_2793at 3376.530 kb on + strand, within Psyr_2793at 3376.531 kb on - strand, within Psyr_2793at 3376.672 kb on - strand, within Psyr_2793at 3376.741 kb on + strand, within Psyr_2793at 3376.741 kb on + strand, within Psyr_2793at 3376.741 kb on + strand, within Psyr_2793at 3376.742 kb on - strand, within Psyr_2793at 3376.742 kb on - strand, within Psyr_2793at 3376.767 kb on + strand, within Psyr_2793at 3376.767 kb on + strand, within Psyr_2793at 3376.767 kb on + strand, within Psyr_2793at 3376.767 kb on + strand, within Psyr_2793at 3376.767 kb on + strand, within Psyr_2793at 3376.767 kb on + strand, within Psyr_2793at 3376.768 kb on - strand, within Psyr_2793at 3376.768 kb on - strand, within Psyr_2793at 3376.768 kb on - strand, within Psyr_2793at 3376.768 kb on - strand, within Psyr_2793at 3376.768 kb on - strand, within Psyr_2793at 3376.811 kb on - strand, within Psyr_2793at 3376.833 kb on + strand, within Psyr_2793at 3376.833 kb on + strand, within Psyr_2793at 3376.833 kb on + strand, within Psyr_2793at 3376.833 kb on + strand, within Psyr_2793at 3376.833 kb on + strand, within Psyr_2793at 3376.833 kb on + strand, within Psyr_2793at 3376.834 kb on - strand, within Psyr_2793at 3376.834 kb on - strand, within Psyr_2793at 3376.834 kb on - strand, within Psyr_2793at 3376.992 kb on + strand, within Psyr_2793at 3376.992 kb on + strand, within Psyr_2793at 3376.992 kb on + strand, within Psyr_2793at 3376.992 kb on + strand, within Psyr_2793at 3376.993 kb on - strand, within Psyr_2793at 3376.993 kb on - strand, within Psyr_2793at 3377.103 kb on + strand, within Psyr_2793at 3377.103 kb on + strand, within Psyr_2793at 3377.103 kb on + strand, within Psyr_2793at 3377.103 kb on + strand, within Psyr_2793at 3377.103 kb on + strand, within Psyr_2793at 3377.103 kb on + strand, within Psyr_2793at 3377.104 kb on - strand, within Psyr_2793at 3377.104 kb on - strand, within Psyr_2793at 3377.301 kb on + strandat 3377.301 kb on + strandat 3377.301 kb on + strandat 3377.301 kb on + strandat 3377.301 kb on + strandat 3377.301 kb on + strandat 3377.301 kb on + strandat 3377.302 kb on - strandat 3377.302 kb on - strandat 3377.302 kb on - strandat 3377.302 kb on - strandat 3377.302 kb on - strandat 3377.379 kb on + strandat 3377.380 kb on - strandat 3377.432 kb on - strandat 3377.449 kb on + strandat 3377.450 kb on - strandat 3377.450 kb on - strandat 3377.567 kb on + strand, within Psyr_2794at 3377.567 kb on + strand, within Psyr_2794at 3377.567 kb on + strand, within Psyr_2794at 3377.567 kb on + strand, within Psyr_2794at 3377.567 kb on + strand, within Psyr_2794at 3377.568 kb on - strand, within Psyr_2794at 3377.568 kb on - strand, within Psyr_2794at 3377.568 kb on - strand, within Psyr_2794at 3377.568 kb on - strand, within Psyr_2794at 3377.742 kb on + strand, within Psyr_2794at 3377.743 kb on - strand, within Psyr_2794at 3377.743 kb on - strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strand, within Psyr_2794at 3377.795 kb on + strandat 3377.796 kb on - strand, within Psyr_2794at 3377.796 kb on - strand, within Psyr_2794at 3377.799 kb on + strand, within Psyr_2794at 3378.012 kb on - strand, within Psyr_2794at 3378.020 kb on + strand, within Psyr_2794at 3378.020 kb on + strand, within Psyr_2794at 3378.063 kb on - strand, within Psyr_2794at 3378.086 kb on + strand, within Psyr_2794at 3378.110 kb on + strand, within Psyr_2794at 3378.110 kb on + strand, within Psyr_2794at 3378.111 kb on - strand, within Psyr_2794at 3378.111 kb on - strand, within Psyr_2794at 3378.164 kb on + strand, within Psyr_2794at 3378.164 kb on + strand, within Psyr_2794at 3378.164 kb on + strand, within Psyr_2794at 3378.165 kb on - strand, within Psyr_2794at 3378.165 kb on - strand, within Psyr_2794at 3378.165 kb on - strand, within Psyr_2794at 3378.165 kb on - strand, within Psyr_2794at 3378.281 kb on + strand, within Psyr_2794

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Theaflavin 10 mM
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3,375,004 - -0.8
3,375,011 - +2.5
3,375,034 + +0.3
3,375,034 + -0.4
3,375,035 - -0.1
3,375,035 - +1.6
3,375,125 + Psyr_2792 0.18 -0.4
3,375,125 + Psyr_2792 0.18 +0.6
3,375,126 - Psyr_2792 0.18 +0.3
3,375,126 - Psyr_2792 0.18 +1.2
3,375,128 + Psyr_2792 0.18 +0.1
3,375,128 + Psyr_2792 0.18 +0.3
3,375,129 - Psyr_2792 0.18 +1.2
3,375,129 - Psyr_2792 0.18 +1.2
3,375,303 + Psyr_2792 0.34 -1.3
3,375,303 + Psyr_2792 0.34 -0.4
3,375,303 + Psyr_2792 0.34 -2.0
3,375,304 - Psyr_2792 0.34 -1.0
3,375,428 - Psyr_2792 0.46 -0.2
3,375,473 + Psyr_2792 0.50 -0.6
3,375,699 + Psyr_2792 0.71 +0.2
3,375,752 + Psyr_2792 0.76 +0.1
3,375,752 + Psyr_2792 0.76 -0.8
3,375,753 - Psyr_2792 0.76 -0.5
3,375,753 - Psyr_2792 0.76 -0.2
3,375,792 + Psyr_2792 0.79 -0.1
3,375,792 + Psyr_2792 0.79 -1.0
3,375,795 - Psyr_2792 0.80 +1.2
3,375,864 - Psyr_2792 0.86 +0.5
3,376,022 + +1.4
3,376,129 - -1.0
3,376,169 + Psyr_2793 0.12 +0.6
3,376,169 + Psyr_2793 0.12 +1.0
3,376,169 + Psyr_2793 0.12 +0.6
3,376,294 - Psyr_2793 0.21 +1.6
3,376,459 + Psyr_2793 0.33 -1.0
3,376,460 - Psyr_2793 0.33 +0.5
3,376,527 - Psyr_2793 0.38 +2.4
3,376,527 - Psyr_2793 0.38 +0.0
3,376,530 + Psyr_2793 0.38 -0.5
3,376,531 - Psyr_2793 0.38 +0.3
3,376,672 - Psyr_2793 0.48 +0.9
3,376,741 + Psyr_2793 0.53 -1.6
3,376,741 + Psyr_2793 0.53 +0.1
3,376,741 + Psyr_2793 0.53 -0.2
3,376,742 - Psyr_2793 0.53 +0.9
3,376,742 - Psyr_2793 0.53 -0.5
3,376,767 + Psyr_2793 0.55 +0.6
3,376,767 + Psyr_2793 0.55 -0.5
3,376,767 + Psyr_2793 0.55 +2.0
3,376,767 + Psyr_2793 0.55 +2.5
3,376,767 + Psyr_2793 0.55 +1.5
3,376,767 + Psyr_2793 0.55 +0.0
3,376,768 - Psyr_2793 0.55 +1.0
3,376,768 - Psyr_2793 0.55 -0.3
3,376,768 - Psyr_2793 0.55 +0.6
3,376,768 - Psyr_2793 0.55 -0.8
3,376,768 - Psyr_2793 0.55 +0.0
3,376,811 - Psyr_2793 0.58 +0.6
3,376,833 + Psyr_2793 0.59 +0.7
3,376,833 + Psyr_2793 0.59 -0.2
3,376,833 + Psyr_2793 0.59 +0.4
3,376,833 + Psyr_2793 0.59 -2.5
3,376,833 + Psyr_2793 0.59 -0.1
3,376,833 + Psyr_2793 0.59 +2.5
3,376,834 - Psyr_2793 0.59 -2.2
3,376,834 - Psyr_2793 0.59 -3.2
3,376,834 - Psyr_2793 0.59 +0.1
3,376,992 + Psyr_2793 0.70 -0.2
3,376,992 + Psyr_2793 0.70 -0.1
3,376,992 + Psyr_2793 0.70 +1.9
3,376,992 + Psyr_2793 0.70 -0.4
3,376,993 - Psyr_2793 0.70 +0.8
3,376,993 - Psyr_2793 0.70 +0.1
3,377,103 + Psyr_2793 0.78 -0.6
3,377,103 + Psyr_2793 0.78 +0.9
3,377,103 + Psyr_2793 0.78 +1.2
3,377,103 + Psyr_2793 0.78 +0.2
3,377,103 + Psyr_2793 0.78 +0.2
3,377,103 + Psyr_2793 0.78 +0.3
3,377,104 - Psyr_2793 0.78 -0.6
3,377,104 - Psyr_2793 0.78 +1.2
3,377,301 + +1.0
3,377,301 + +0.3
3,377,301 + +0.4
3,377,301 + +0.5
3,377,301 + -0.1
3,377,301 + -0.8
3,377,301 + -0.9
3,377,302 - +0.2
3,377,302 - +0.2
3,377,302 - -0.9
3,377,302 - +1.7
3,377,302 - -0.0
3,377,379 + +2.1
3,377,380 - -0.0
3,377,432 - +0.6
3,377,449 + +0.2
3,377,450 - -0.2
3,377,450 - +1.5
3,377,567 + Psyr_2794 0.12 -1.4
3,377,567 + Psyr_2794 0.12 -0.0
3,377,567 + Psyr_2794 0.12 +1.0
3,377,567 + Psyr_2794 0.12 +2.8
3,377,567 + Psyr_2794 0.12 -0.2
3,377,568 - Psyr_2794 0.12 -1.5
3,377,568 - Psyr_2794 0.12 +1.7
3,377,568 - Psyr_2794 0.12 -0.0
3,377,568 - Psyr_2794 0.12 -0.8
3,377,742 + Psyr_2794 0.25 -0.9
3,377,743 - Psyr_2794 0.26 -0.4
3,377,743 - Psyr_2794 0.26 +0.6
3,377,795 + Psyr_2794 0.30 -2.0
3,377,795 + Psyr_2794 0.30 -1.7
3,377,795 + Psyr_2794 0.30 +0.8
3,377,795 + Psyr_2794 0.30 +0.0
3,377,795 + Psyr_2794 0.30 -0.7
3,377,795 + +1.8
3,377,796 - Psyr_2794 0.30 -0.4
3,377,796 - Psyr_2794 0.30 +1.2
3,377,799 + Psyr_2794 0.30 -1.8
3,378,012 - Psyr_2794 0.46 +1.3
3,378,020 + Psyr_2794 0.47 +1.1
3,378,020 + Psyr_2794 0.47 -1.1
3,378,063 - Psyr_2794 0.50 -0.4
3,378,086 + Psyr_2794 0.52 +0.2
3,378,110 + Psyr_2794 0.54 -2.4
3,378,110 + Psyr_2794 0.54 -1.0
3,378,111 - Psyr_2794 0.54 +0.1
3,378,111 - Psyr_2794 0.54 +0.3
3,378,164 + Psyr_2794 0.58 +0.1
3,378,164 + Psyr_2794 0.58 +0.2
3,378,164 + Psyr_2794 0.58 -2.4
3,378,165 - Psyr_2794 0.58 +0.8
3,378,165 - Psyr_2794 0.58 +0.5
3,378,165 - Psyr_2794 0.58 -0.1
3,378,165 - Psyr_2794 0.58 -1.5
3,378,281 + Psyr_2794 0.67 -0.1

Or see this region's nucleotide sequence