Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2667

Experiment: KB with Theaflavin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2665 and Psyr_2666 are separated by 178 nucleotidesPsyr_2666 and Psyr_2667 are separated by 163 nucleotidesPsyr_2667 and Psyr_2668 are separated by 125 nucleotidesPsyr_2668 and Psyr_2669 are separated by 65 nucleotides Psyr_2665: Psyr_2665 - Phenazine biosynthesis PhzC/PhzF protein, at 3,235,541 to 3,236,047 _2665 Psyr_2666: Psyr_2666 - NUDIX hydrolase, at 3,236,226 to 3,236,753 _2666 Psyr_2667: Psyr_2667 - Transposase Tn3, at 3,236,917 to 3,239,802 _2667 Psyr_2668: Psyr_2668 - Helix-turn-helix, Fis-type, at 3,239,928 to 3,240,542 _2668 Psyr_2669: Psyr_2669 - Aminoglycoside phosphotransferase, at 3,240,608 to 3,241,411 _2669 Position (kb) 3236 3237 3238 3239 3240Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3235.925 kb on + strand, within Psyr_2665at 3235.925 kb on + strand, within Psyr_2665at 3235.925 kb on + strand, within Psyr_2665at 3235.928 kb on - strand, within Psyr_2665at 3235.928 kb on - strand, within Psyr_2665at 3235.928 kb on - strand, within Psyr_2665at 3235.942 kb on + strand, within Psyr_2665at 3236.123 kb on + strandat 3236.123 kb on + strandat 3236.141 kb on + strandat 3236.163 kb on - strandat 3236.268 kb on - strandat 3236.268 kb on - strandat 3236.318 kb on + strand, within Psyr_2666at 3236.319 kb on - strand, within Psyr_2666at 3236.330 kb on + strand, within Psyr_2666at 3236.382 kb on + strand, within Psyr_2666at 3236.382 kb on + strand, within Psyr_2666at 3236.382 kb on + strand, within Psyr_2666at 3236.437 kb on + strand, within Psyr_2666at 3236.438 kb on - strand, within Psyr_2666at 3236.438 kb on - strand, within Psyr_2666at 3236.438 kb on - strand, within Psyr_2666at 3236.438 kb on - strand, within Psyr_2666at 3236.467 kb on + strand, within Psyr_2666at 3236.503 kb on + strand, within Psyr_2666at 3236.503 kb on + strand, within Psyr_2666at 3236.504 kb on - strand, within Psyr_2666at 3236.510 kb on - strand, within Psyr_2666at 3236.510 kb on - strand, within Psyr_2666at 3236.510 kb on - strand, within Psyr_2666at 3236.573 kb on + strand, within Psyr_2666at 3236.624 kb on + strand, within Psyr_2666at 3236.626 kb on + strand, within Psyr_2666at 3236.626 kb on + strand, within Psyr_2666at 3236.636 kb on + strand, within Psyr_2666at 3236.643 kb on + strand, within Psyr_2666at 3236.644 kb on - strand, within Psyr_2666at 3236.667 kb on + strand, within Psyr_2666at 3236.668 kb on - strand, within Psyr_2666at 3236.668 kb on - strand, within Psyr_2666at 3236.697 kb on + strand, within Psyr_2666at 3236.796 kb on - strandat 3237.635 kb on + strand, within Psyr_2667at 3237.635 kb on + strand, within Psyr_2667at 3237.635 kb on + strand, within Psyr_2667at 3237.635 kb on + strand, within Psyr_2667at 3237.635 kb on + strand, within Psyr_2667at 3237.635 kb on + strand, within Psyr_2667at 3237.636 kb on - strand, within Psyr_2667at 3237.686 kb on + strand, within Psyr_2667at 3237.686 kb on + strand, within Psyr_2667at 3237.686 kb on + strand, within Psyr_2667at 3237.687 kb on - strand, within Psyr_2667at 3237.705 kb on + strand, within Psyr_2667at 3237.707 kb on + strand, within Psyr_2667at 3237.708 kb on - strand, within Psyr_2667at 3237.881 kb on + strand, within Psyr_2667at 3237.882 kb on - strand, within Psyr_2667at 3238.386 kb on + strand, within Psyr_2667at 3238.386 kb on + strand, within Psyr_2667at 3238.386 kb on + strand, within Psyr_2667at 3238.387 kb on - strand, within Psyr_2667at 3238.387 kb on - strand, within Psyr_2667at 3238.387 kb on - strand, within Psyr_2667at 3238.387 kb on - strand, within Psyr_2667at 3238.387 kb on - strand, within Psyr_2667at 3238.387 kb on - strand, within Psyr_2667at 3238.387 kb on - strand, within Psyr_2667at 3238.387 kb on - strand, within Psyr_2667at 3238.389 kb on + strand, within Psyr_2667at 3238.390 kb on - strand, within Psyr_2667at 3238.450 kb on + strand, within Psyr_2667at 3238.723 kb on + strand, within Psyr_2667at 3238.872 kb on + strand, within Psyr_2667at 3238.872 kb on + strand, within Psyr_2667at 3238.872 kb on + strand, within Psyr_2667at 3238.872 kb on + strand, within Psyr_2667at 3238.873 kb on - strand, within Psyr_2667at 3238.873 kb on - strand, within Psyr_2667at 3239.018 kb on + strand, within Psyr_2667at 3239.022 kb on - strand, within Psyr_2667at 3239.109 kb on - strand, within Psyr_2667at 3239.109 kb on - strand, within Psyr_2667at 3239.244 kb on + strand, within Psyr_2667at 3239.244 kb on + strand, within Psyr_2667at 3239.245 kb on - strand, within Psyr_2667at 3239.245 kb on - strand, within Psyr_2667at 3239.245 kb on - strand, within Psyr_2667at 3239.245 kb on - strand, within Psyr_2667at 3239.365 kb on + strand, within Psyr_2667at 3239.472 kb on - strand, within Psyr_2667at 3239.525 kb on + strandat 3239.525 kb on + strandat 3239.525 kb on + strandat 3239.526 kb on - strandat 3239.526 kb on - strandat 3239.526 kb on - strandat 3239.530 kb on + strandat 3239.531 kb on - strandat 3239.688 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.715 kb on + strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.716 kb on - strandat 3239.717 kb on + strandat 3239.718 kb on - strandat 3239.782 kb on + strandat 3239.783 kb on - strandat 3239.802 kb on + strandat 3239.802 kb on + strandat 3239.803 kb on - strandat 3239.803 kb on - strandat 3239.865 kb on + strandat 3239.925 kb on + strandat 3239.925 kb on + strandat 3240.026 kb on + strand, within Psyr_2668at 3240.027 kb on - strand, within Psyr_2668at 3240.027 kb on - strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.030 kb on + strand, within Psyr_2668at 3240.031 kb on - strand, within Psyr_2668at 3240.536 kb on + strandat 3240.536 kb on + strandat 3240.536 kb on + strandat 3240.536 kb on + strandat 3240.537 kb on - strandat 3240.537 kb on - strandat 3240.537 kb on - strandat 3240.540 kb on + strandat 3240.540 kb on + strandat 3240.540 kb on + strandat 3240.540 kb on + strandat 3240.540 kb on + strandat 3240.620 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Theaflavin 10 mM
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3,235,925 + Psyr_2665 0.76 -0.7
3,235,925 + Psyr_2665 0.76 -0.4
3,235,925 + Psyr_2665 0.76 +0.7
3,235,928 - Psyr_2665 0.76 -1.2
3,235,928 - Psyr_2665 0.76 -2.3
3,235,928 - Psyr_2665 0.76 +0.3
3,235,942 + Psyr_2665 0.79 +0.0
3,236,123 + +3.3
3,236,123 + -0.7
3,236,141 + -0.9
3,236,163 - -0.8
3,236,268 - -0.9
3,236,268 - -0.3
3,236,318 + Psyr_2666 0.17 -0.8
3,236,319 - Psyr_2666 0.18 -0.1
3,236,330 + Psyr_2666 0.20 -0.9
3,236,382 + Psyr_2666 0.30 +0.7
3,236,382 + Psyr_2666 0.30 +1.3
3,236,382 + Psyr_2666 0.30 -2.0
3,236,437 + Psyr_2666 0.40 +0.2
3,236,438 - Psyr_2666 0.40 +0.9
3,236,438 - Psyr_2666 0.40 -0.1
3,236,438 - Psyr_2666 0.40 +0.8
3,236,438 - Psyr_2666 0.40 -0.2
3,236,467 + Psyr_2666 0.46 -0.7
3,236,503 + Psyr_2666 0.52 -2.7
3,236,503 + Psyr_2666 0.52 +1.3
3,236,504 - Psyr_2666 0.53 -0.2
3,236,510 - Psyr_2666 0.54 +0.9
3,236,510 - Psyr_2666 0.54 +0.2
3,236,510 - Psyr_2666 0.54 +2.1
3,236,573 + Psyr_2666 0.66 +0.4
3,236,624 + Psyr_2666 0.75 +0.9
3,236,626 + Psyr_2666 0.76 -1.6
3,236,626 + Psyr_2666 0.76 +0.7
3,236,636 + Psyr_2666 0.78 +0.1
3,236,643 + Psyr_2666 0.79 +0.8
3,236,644 - Psyr_2666 0.79 -1.5
3,236,667 + Psyr_2666 0.84 -2.0
3,236,668 - Psyr_2666 0.84 -0.7
3,236,668 - Psyr_2666 0.84 -0.4
3,236,697 + Psyr_2666 0.89 +1.0
3,236,796 - +0.1
3,237,635 + Psyr_2667 0.25 +0.3
3,237,635 + Psyr_2667 0.25 -2.2
3,237,635 + Psyr_2667 0.25 +1.9
3,237,635 + Psyr_2667 0.25 +0.3
3,237,635 + Psyr_2667 0.25 -0.9
3,237,635 + Psyr_2667 0.25 -1.8
3,237,636 - Psyr_2667 0.25 -0.2
3,237,686 + Psyr_2667 0.27 -0.3
3,237,686 + Psyr_2667 0.27 +0.5
3,237,686 + Psyr_2667 0.27 +0.6
3,237,687 - Psyr_2667 0.27 -0.7
3,237,705 + Psyr_2667 0.27 +0.5
3,237,707 + Psyr_2667 0.27 +0.8
3,237,708 - Psyr_2667 0.27 -0.2
3,237,881 + Psyr_2667 0.33 +0.7
3,237,882 - Psyr_2667 0.33 +0.2
3,238,386 + Psyr_2667 0.51 -0.4
3,238,386 + Psyr_2667 0.51 +0.4
3,238,386 + Psyr_2667 0.51 +0.1
3,238,387 - Psyr_2667 0.51 +0.7
3,238,387 - Psyr_2667 0.51 +0.8
3,238,387 - Psyr_2667 0.51 +0.1
3,238,387 - Psyr_2667 0.51 +0.8
3,238,387 - Psyr_2667 0.51 -0.0
3,238,387 - Psyr_2667 0.51 +0.7
3,238,387 - Psyr_2667 0.51 -0.7
3,238,387 - Psyr_2667 0.51 -0.3
3,238,389 + Psyr_2667 0.51 -0.2
3,238,390 - Psyr_2667 0.51 -0.2
3,238,450 + Psyr_2667 0.53 -1.7
3,238,723 + Psyr_2667 0.63 +1.9
3,238,872 + Psyr_2667 0.68 +0.6
3,238,872 + Psyr_2667 0.68 +0.5
3,238,872 + Psyr_2667 0.68 +1.6
3,238,872 + Psyr_2667 0.68 +0.0
3,238,873 - Psyr_2667 0.68 -0.4
3,238,873 - Psyr_2667 0.68 -1.0
3,239,018 + Psyr_2667 0.73 +0.6
3,239,022 - Psyr_2667 0.73 +2.5
3,239,109 - Psyr_2667 0.76 -0.4
3,239,109 - Psyr_2667 0.76 -2.2
3,239,244 + Psyr_2667 0.81 -0.6
3,239,244 + Psyr_2667 0.81 +1.4
3,239,245 - Psyr_2667 0.81 +0.8
3,239,245 - Psyr_2667 0.81 +0.3
3,239,245 - Psyr_2667 0.81 -0.5
3,239,245 - Psyr_2667 0.81 -0.2
3,239,365 + Psyr_2667 0.85 +0.6
3,239,472 - Psyr_2667 0.89 +0.0
3,239,525 + -0.2
3,239,525 + +1.6
3,239,525 + +0.1
3,239,526 - -0.4
3,239,526 - -0.3
3,239,526 - +0.4
3,239,530 + -0.5
3,239,531 - +0.3
3,239,688 + +0.3
3,239,715 + -0.1
3,239,715 + +0.6
3,239,715 + +1.3
3,239,715 + -0.3
3,239,715 + -0.2
3,239,715 + +0.3
3,239,715 + -1.6
3,239,716 - +1.0
3,239,716 - +0.6
3,239,716 - +0.3
3,239,716 - +2.0
3,239,716 - +0.1
3,239,716 - -0.9
3,239,717 + -1.0
3,239,718 - +0.4
3,239,782 + +0.2
3,239,783 - -0.1
3,239,802 + -1.2
3,239,802 + +0.3
3,239,803 - +0.9
3,239,803 - -0.6
3,239,865 + +1.0
3,239,925 + +0.1
3,239,925 + +0.4
3,240,026 + Psyr_2668 0.16 -0.4
3,240,027 - Psyr_2668 0.16 -0.5
3,240,027 - Psyr_2668 0.16 -0.7
3,240,030 + Psyr_2668 0.17 +1.9
3,240,030 + Psyr_2668 0.17 -0.7
3,240,030 + Psyr_2668 0.17 -0.4
3,240,030 + Psyr_2668 0.17 -0.9
3,240,030 + Psyr_2668 0.17 -0.4
3,240,030 + Psyr_2668 0.17 +0.2
3,240,031 - Psyr_2668 0.17 +1.3
3,240,536 + -0.8
3,240,536 + -0.2
3,240,536 + -1.3
3,240,536 + -0.6
3,240,537 - -1.3
3,240,537 - -0.1
3,240,537 - -1.0
3,240,540 + -0.3
3,240,540 + -0.9
3,240,540 + -0.1
3,240,540 + -0.3
3,240,540 + -2.7
3,240,620 - -0.6

Or see this region's nucleotide sequence