Experiment: KB with Theaflavin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0183 and Psyr_0184 are separated by 13 nucleotides Psyr_0184 and Psyr_0185 are separated by 2 nucleotides Psyr_0185 and Psyr_0186 overlap by 8 nucleotides Psyr_0186 and Psyr_0187 are separated by 70 nucleotides
Psyr_0183: Psyr_0183 - diaminopimelate epimerase, at 196,313 to 197,143
_0183
Psyr_0184: Psyr_0184 - Protein of unknown function DUF484, at 197,157 to 197,891
_0184
Psyr_0185: Psyr_0185 - tyrosine recombinase XerC subunit, at 197,894 to 198,793
_0185
Psyr_0186: Psyr_0186 - HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1, at 198,786 to 199,478
_0186
Psyr_0187: Psyr_0187 - conserved hypothetical protein, at 199,549 to 199,875
_0187
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.149 kb on + strand at 197.149 kb on + strand at 197.149 kb on + strand at 197.153 kb on + strand at 197.153 kb on + strand at 197.153 kb on + strand at 197.153 kb on + strand at 197.154 kb on - strand at 197.154 kb on - strand at 197.154 kb on - strand at 197.154 kb on - strand at 197.154 kb on - strand at 197.154 kb on - strand at 197.154 kb on - strand at 197.154 kb on - strand at 197.793 kb on + strand, within Psyr_0184 at 197.793 kb on + strand, within Psyr_0184 at 197.793 kb on + strand, within Psyr_0184 at 197.794 kb on - strand, within Psyr_0184 at 197.794 kb on - strand, within Psyr_0184 at 197.826 kb on + strand at 197.826 kb on + strand at 197.826 kb on + strand at 197.826 kb on + strand at 197.826 kb on + strand at 197.826 kb on + strand at 197.827 kb on - strand at 197.827 kb on - strand at 197.827 kb on - strand at 197.827 kb on - strand at 197.827 kb on - strand at 197.827 kb on - strand at 197.827 kb on - strand at 197.827 kb on - strand at 197.827 kb on - strand at 197.828 kb on + strand at 197.875 kb on + strand at 197.915 kb on + strand at 197.916 kb on - strand at 197.916 kb on - strand at 197.916 kb on - strand at 197.916 kb on - strand at 197.999 kb on + strand, within Psyr_0185 at 198.000 kb on - strand, within Psyr_0185 at 198.134 kb on + strand, within Psyr_0185 at 198.134 kb on + strand, within Psyr_0185 at 198.134 kb on + strand, within Psyr_0185 at 198.135 kb on - strand, within Psyr_0185 at 198.135 kb on - strand, within Psyr_0185 at 198.135 kb on - strand, within Psyr_0185 at 198.135 kb on - strand, within Psyr_0185 at 198.135 kb on - strand, within Psyr_0185 at 198.135 kb on - strand, within Psyr_0185 at 198.135 kb on - strand, within Psyr_0185 at 198.140 kb on + strand, within Psyr_0185 at 198.140 kb on + strand, within Psyr_0185 at 198.140 kb on + strand, within Psyr_0185 at 198.141 kb on - strand, within Psyr_0185 at 198.141 kb on - strand, within Psyr_0185 at 198.141 kb on - strand, within Psyr_0185 at 198.420 kb on + strand, within Psyr_0185 at 198.691 kb on + strand, within Psyr_0185 at 198.691 kb on + strand, within Psyr_0185 at 198.692 kb on - strand, within Psyr_0185 at 198.692 kb on - strand, within Psyr_0185 at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.705 kb on + strand at 198.706 kb on - strand at 198.706 kb on - strand at 198.706 kb on - strand at 198.706 kb on - strand at 198.706 kb on - strand at 198.706 kb on - strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.707 kb on + strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.708 kb on - strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.709 kb on + strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.710 kb on - strand at 198.743 kb on + strand at 198.744 kb on - strand at 198.744 kb on - strand at 198.772 kb on + strand at 198.772 kb on + strand at 198.772 kb on + strand at 198.773 kb on - strand at 198.773 kb on - strand at 198.791 kb on + strand at 198.792 kb on - strand at 198.792 kb on - strand at 198.792 kb on - strand at 198.975 kb on - strand, within Psyr_0186 at 198.975 kb on - strand, within Psyr_0186 at 199.163 kb on + strand, within Psyr_0186 at 199.206 kb on + strand, within Psyr_0186 at 199.206 kb on + strand, within Psyr_0186 at 199.207 kb on - strand, within Psyr_0186 at 199.381 kb on - strand, within Psyr_0186 at 199.381 kb on - strand, within Psyr_0186 at 199.381 kb on - strand, within Psyr_0186 at 199.500 kb on + strand at 199.501 kb on - strand at 199.501 kb on - strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.534 kb on + strand at 199.535 kb on - strand at 199.535 kb on - strand at 199.535 kb on - strand at 199.535 kb on - strand at 199.554 kb on + strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.568 kb on + strand at 199.569 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Theaflavin 10 mM remove 197,149 + +2.3 197,149 + -0.6 197,149 + -0.1 197,153 + +0.3 197,153 + -0.2 197,153 + -0.2 197,153 + -1.9 197,154 - -0.3 197,154 - +2.3 197,154 - +0.0 197,154 - +0.4 197,154 - -0.3 197,154 - -1.2 197,154 - -0.7 197,154 - -1.6 197,793 + Psyr_0184 0.87 -1.0 197,793 + Psyr_0184 0.87 -1.2 197,793 + Psyr_0184 0.87 +0.9 197,794 - Psyr_0184 0.87 -1.9 197,794 - Psyr_0184 0.87 -0.5 197,826 + -0.4 197,826 + -1.1 197,826 + -0.3 197,826 + +0.8 197,826 + -0.1 197,826 + -0.3 197,827 - -0.0 197,827 - -0.5 197,827 - -1.1 197,827 - -1.2 197,827 - -0.9 197,827 - -1.9 197,827 - +0.3 197,827 - -0.3 197,827 - -1.4 197,828 + +1.0 197,875 + -0.3 197,915 + -1.1 197,916 - -1.0 197,916 - -1.9 197,916 - -0.5 197,916 - -2.5 197,999 + Psyr_0185 0.12 -0.1 198,000 - Psyr_0185 0.12 +0.3 198,134 + Psyr_0185 0.27 -0.7 198,134 + Psyr_0185 0.27 -0.1 198,134 + Psyr_0185 0.27 -1.1 198,135 - Psyr_0185 0.27 +1.3 198,135 - Psyr_0185 0.27 -0.4 198,135 - Psyr_0185 0.27 -1.2 198,135 - Psyr_0185 0.27 -0.7 198,135 - Psyr_0185 0.27 -0.7 198,135 - Psyr_0185 0.27 +0.8 198,135 - Psyr_0185 0.27 -0.3 198,140 + Psyr_0185 0.27 -2.2 198,140 + Psyr_0185 0.27 +0.0 198,140 + Psyr_0185 0.27 -1.3 198,141 - Psyr_0185 0.27 -0.6 198,141 - Psyr_0185 0.27 -2.3 198,141 - Psyr_0185 0.27 -0.1 198,420 + Psyr_0185 0.58 +0.3 198,691 + Psyr_0185 0.89 -1.3 198,691 + Psyr_0185 0.89 -0.5 198,692 - Psyr_0185 0.89 -0.7 198,692 - Psyr_0185 0.89 -1.6 198,705 + -0.2 198,705 + -1.0 198,705 + -1.4 198,705 + -1.2 198,705 + -0.6 198,705 + +0.3 198,705 + -1.7 198,705 + +0.4 198,705 + -1.5 198,705 + -1.1 198,705 + -0.2 198,705 + -0.7 198,706 - -0.1 198,706 - -1.5 198,706 - -0.2 198,706 - -0.6 198,706 - +1.6 198,706 - +0.0 198,707 + +0.0 198,707 + -0.1 198,707 + -0.5 198,707 + -2.1 198,707 + +0.3 198,707 + -1.4 198,707 + -0.1 198,707 + -1.3 198,707 + -0.8 198,707 + -0.9 198,707 + -0.4 198,707 + -0.2 198,707 + -1.2 198,707 + +0.4 198,707 + -1.6 198,707 + +1.8 198,707 + +0.9 198,707 + -0.2 198,707 + -0.6 198,707 + -0.4 198,707 + -0.9 198,707 + -0.7 198,707 + +0.5 198,707 + -1.7 198,707 + -1.0 198,708 - +0.5 198,708 - +0.3 198,708 - +0.1 198,708 - -0.6 198,708 - +1.3 198,708 - -0.1 198,708 - -0.6 198,708 - -0.2 198,708 - -0.5 198,708 - -0.4 198,708 - +0.3 198,708 - -1.1 198,708 - -0.1 198,708 - -2.7 198,708 - +0.4 198,708 - -0.8 198,708 - -1.5 198,708 - +0.3 198,708 - -1.1 198,708 - -0.7 198,708 - +0.4 198,708 - -1.0 198,708 - -0.2 198,708 - -0.6 198,708 - -2.7 198,708 - -1.6 198,708 - -2.3 198,708 - -0.9 198,708 - -2.0 198,708 - +0.7 198,708 - +0.6 198,709 + +0.4 198,709 + -1.3 198,709 + -0.2 198,709 + +0.8 198,709 + -0.6 198,709 + -2.0 198,709 + +0.0 198,709 + -1.3 198,709 + +0.0 198,709 + -0.0 198,709 + -1.2 198,709 + -1.0 198,709 + -0.1 198,709 + -1.3 198,709 + -1.7 198,709 + -2.8 198,709 + +0.3 198,709 + -0.1 198,709 + +0.3 198,709 + +0.6 198,709 + +0.8 198,709 + +0.7 198,709 + +0.7 198,709 + -0.1 198,709 + +0.2 198,709 + -1.6 198,709 + +0.1 198,709 + -2.8 198,709 + +0.3 198,709 + -0.0 198,710 - -0.7 198,710 - +1.0 198,710 - -2.0 198,710 - -1.1 198,710 - -2.0 198,710 - +0.4 198,710 - +0.1 198,710 - -0.2 198,710 - -1.2 198,710 - -0.1 198,710 - -0.6 198,710 - -1.1 198,710 - -1.2 198,710 - -2.0 198,710 - -0.1 198,710 - -0.4 198,710 - -0.5 198,710 - -0.4 198,710 - +0.1 198,710 - -1.1 198,710 - +0.9 198,710 - -0.7 198,710 - -0.5 198,710 - -0.3 198,710 - -2.4 198,710 - -0.1 198,710 - +0.2 198,710 - -0.1 198,710 - +0.1 198,710 - -1.2 198,710 - -1.1 198,710 - -1.1 198,710 - -1.0 198,710 - -3.1 198,710 - +0.8 198,710 - -0.5 198,743 + -0.6 198,744 - +0.3 198,744 - +0.5 198,772 + +0.5 198,772 + -0.4 198,772 + -1.2 198,773 - -0.1 198,773 - -0.2 198,791 + +0.1 198,792 - +0.6 198,792 - -0.5 198,792 - -0.6 198,975 - Psyr_0186 0.27 +0.0 198,975 - Psyr_0186 0.27 +0.3 199,163 + Psyr_0186 0.54 +0.4 199,206 + Psyr_0186 0.61 -0.4 199,206 + Psyr_0186 0.61 +0.6 199,207 - Psyr_0186 0.61 -0.1 199,381 - Psyr_0186 0.86 -0.1 199,381 - Psyr_0186 0.86 +1.0 199,381 - Psyr_0186 0.86 -0.4 199,500 + +0.1 199,501 - +0.2 199,501 - -0.8 199,534 + -2.2 199,534 + +0.4 199,534 + +1.6 199,534 + +0.3 199,534 + -0.4 199,534 + -0.9 199,534 + -0.6 199,535 - -0.4 199,535 - -0.2 199,535 - +0.1 199,535 - -0.3 199,554 + -0.5 199,568 + -1.7 199,568 + +0.3 199,568 + -2.4 199,568 + -2.0 199,569 - -1.3
Or see this region's nucleotide sequence