Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31495

Experiment: Sucrose (C) and Glycine betaine (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose (C) and Glycine betaine (N); with TAPS
2,059,229	+		PFLU_RS09305	0.81	-0.4
2,059,229	+		PFLU_RS09305	0.81	-0.8
2,059,230	-		PFLU_RS09305	0.81	+0.3
2,059,230	-		PFLU_RS09305	0.81	+0.3
2,059,230	-		PFLU_RS09305	0.81	+1.3
2,059,232	+		PFLU_RS09305	0.81	-2.2
2,059,233	-		PFLU_RS09305	0.81	-0.4
2,059,233	-		PFLU_RS09305	0.81	+0.8
2,059,233	-		PFLU_RS09305	0.81	+1.3
2,059,288	+		PFLU_RS09305	0.84	+2.9
2,059,385	+		PFLU_RS09305	0.89	-0.6
2,059,385	+		PFLU_RS09305	0.89	+1.6
2,059,385	+		PFLU_RS09305	0.89	-0.5
2,059,385	+		PFLU_RS09305	0.89	-2.4
2,059,385	+		PFLU_RS09305	0.89	-0.6
2,059,385	+		PFLU_RS09305	0.89	-2.0
2,059,385	+		PFLU_RS09305	0.89	-1.6
2,059,385	+		PFLU_RS09305	0.89	-1.5
2,059,385	+		PFLU_RS09305	0.89	-1.0
2,059,385	+		PFLU_RS09305	0.89	-2.1
2,059,386	-		PFLU_RS09305	0.89	-2.4
2,059,386	-		PFLU_RS09305	0.89	+1.3
2,059,386	-		PFLU_RS09305	0.89	-1.3
2,059,386	-		PFLU_RS09305	0.89	-0.3
2,059,386	-		PFLU_RS09305	0.89	-0.4
2,059,424	+				-1.4
2,059,424	+				-0.8
2,059,424	+				-1.7
2,059,424	+				-3.7
2,059,424	+				+0.1
2,059,425	-				+1.9
2,059,463	+				-0.9
2,059,463	+				-1.0
2,059,463	+				-2.0
2,059,463	+				-0.8
2,059,463	+				-1.2
2,059,463	+				-1.3
2,059,463	+				-1.4
2,059,464	-				-1.7
2,059,464	-				-0.1
2,059,464	-				+1.3
2,059,464	-				-0.8
2,059,464	-				+0.8
2,059,464	-				+1.9
2,059,508	+				-0.6
2,059,526	+				-1.6
2,059,526	+				+0.8
2,059,527	-				+2.9
2,059,529	+				-0.1
2,059,529	+				-0.2
2,059,529	+				-1.4
2,059,529	+				-3.0
2,059,529	+				-2.0
2,059,530	-				-0.8
2,059,530	-				-0.1
2,059,530	-				+1.3
2,059,533	+				-3.3
2,059,533	+				-0.7
2,059,534	-				-0.8
2,059,595	-				-0.3
2,059,595	-				-0.4
2,059,595	-				+0.6
2,059,595	-				+0.3
2,059,707	+				+1.1
2,059,707	+				+0.2
2,059,708	-				+0.3
2,059,708	-				-2.5
2,059,708	-				-0.4
2,059,718	+				-0.0
2,059,718	+				-0.2
2,059,718	+				-0.6
2,059,718	+				+0.6
2,059,718	+				-0.1
2,059,718	+				+0.6
2,059,719	-				-1.4
2,059,719	-				-2.8
2,059,719	-				+0.1
2,059,719	-				-1.7
2,059,719	-				+0.9
2,059,755	+				+0.8
2,059,782	-				-1.7
2,059,837	-				-0.9
2,059,940	+		PFLU_RS30550	0.37	-1.3
2,059,957	-		PFLU_RS30550	0.42	+1.0
2,059,964	+		PFLU_RS30550	0.44	+2.5
2,059,964	+		PFLU_RS30550	0.44	+0.7
2,059,964	+		PFLU_RS30550	0.44	+0.1
2,059,965	-		PFLU_RS30550	0.44	+0.1
2,059,965	-		PFLU_RS30550	0.44	+0.7
2,059,965	-		PFLU_RS30550	0.44	-0.6
2,059,965	-		PFLU_RS30550	0.44	+0.4
2,060,012	+		PFLU_RS30550	0.58	+0.4
2,060,048	-		PFLU_RS30550	0.69	-1.9
2,060,226	+				+0.9
2,060,227	-				+1.6
2,060,345	+		PFLU_RS31495	0.60	-0.1
2,060,345	+		PFLU_RS31495	0.60	-0.3
2,060,345	+		PFLU_RS31495	0.60	-0.7
2,060,345	+		PFLU_RS31495	0.60	+0.1
2,060,345	+		PFLU_RS31495	0.60	-0.9
2,060,345	+		PFLU_RS31495	0.60	+0.6
2,060,345	+		PFLU_RS31495	0.60	+0.9
2,060,346	-		PFLU_RS31495	0.60	+0.4
2,060,346	-		PFLU_RS31495	0.60	-1.4
2,060,346	-		PFLU_RS31495	0.60	-0.4
2,060,346	-		PFLU_RS31495	0.60	-0.3
2,060,346	-		PFLU_RS31495	0.60	-0.6
2,060,346	-		PFLU_RS31495	0.60	+0.8
2,060,431	+				+0.6
2,060,431	+				+0.4
2,060,432	-				+0.3
2,060,432	-				-0.3
2,060,432	-				-0.6
2,060,435	-				+0.5
2,060,435	-				-0.2
2,060,450	+				-0.2
2,060,450	+				-0.0
2,060,482	-				+0.2
2,060,517	+				-1.3
2,060,517	+				-0.1
2,060,517	+				+0.6
2,060,517	+				+0.4
2,060,517	+				+1.3
2,060,518	-				+0.1
2,060,518	-				-0.4
2,060,518	-				-0.6
2,060,518	-				+1.0
2,060,518	-				-0.3
2,060,518	-				+0.0
2,060,518	-				-2.2
2,060,518	-				-1.7
2,060,539	+				+0.3
2,060,539	+				-0.6
2,060,539	+				-0.8
2,060,539	+				+0.9
2,060,539	+				+0.8
2,060,539	+				-1.6
2,060,540	-				+0.4
2,060,540	-				-1.4
2,060,540	-				-0.6
2,060,540	-				-1.4
2,060,567	+				-1.6
2,060,568	-				-0.4
2,060,594	+				-0.7
2,060,595	-				+1.7
2,060,595	-				-0.5
2,060,646	-				-0.4
2,060,646	-				+0.2
2,060,646	-				-0.1
2,060,646	-				-0.7
2,060,646	-				+0.8
2,060,674	+				-0.1
2,060,674	+				+0.1
2,060,675	-				+0.8
2,060,675	-				-1.6
2,060,675	-				-1.7
2,060,675	-				-0.7
2,060,693	+				+1.5
2,060,693	+				+0.4
2,060,693	+				+0.0
2,060,693	+				-0.1
2,060,693	+				-0.4
2,060,694	-				-1.7
2,060,694	-				+0.7
2,060,694	-				+0.7
2,060,694	-				+0.2
2,060,772	-				+0.5
2,060,833	-				-0.1
2,060,854	+				-0.3
2,060,854	+				+0.6
2,060,854	+				-1.1
2,060,855	-				+0.4
2,060,858	+				-0.1
2,060,859	-				-1.9
2,060,871	+				-0.2
2,060,871	+				+0.0
2,060,871	+				-0.8
2,060,871	+				+0.7
2,060,872	-				-1.1
2,060,872	-				-1.1
2,060,872	-				+1.1
2,060,872	-				-0.1
2,060,872	-				+0.5
2,060,925	-				+0.1
2,060,960	+				-1.1
2,060,960	+				-0.7
2,060,960	+				-0.5
2,060,961	-				+0.8
2,060,974	+				-0.7
2,060,975	-				-1.6
2,060,975	-				+0.1
2,061,015	+				-1.1
2,061,019	+				-0.7
2,061,019	+				+1.1
2,061,020	-				-0.4
2,061,020	-				-0.9
2,061,020	-				+0.8
2,061,059	-				-0.5
2,061,059	-				+0.3
2,061,059	-				+0.4
2,061,059	-				-1.6
2,061,059	-				+0.5
2,061,087	+				-0.1
2,061,087	+				+0.0
2,061,088	-				-1.9
2,061,102	+				+0.6
2,061,102	+				+1.0
2,061,102	+				-0.3
2,061,102	+				-0.6
2,061,235	-				+0.3
2,061,268	-				-0.6
2,061,268	-				-0.4
2,061,304	+				-1.7
2,061,339	+				+0.7
2,061,339	+				-0.3
2,061,339	+				+2.2
2,061,340	-				-1.0
2,061,340	-				-0.4
2,061,342	+				+1.1
2,061,342	+				+0.8
2,061,342	+				-0.8
2,061,342	+				-1.1
2,061,343	-				+0.1
2,061,343	-				-0.2
2,061,343	-				-0.7
2,061,343	-				+0.2
2,061,345	+				+1.3
2,061,345	+				+1.6
2,061,345	+				-0.1
2,061,345	+				-0.4
2,061,345	+				+0.5
2,061,346	-				-0.2
2,061,346	-				+0.2
2,061,346	-				+0.2
2,061,346	-				-0.9
2,061,346	-				+0.4
2,061,346	-				-0.8
2,061,370	+				-1.5
2,061,370	+				-0.4
2,061,370	+				+0.4
2,061,370	+				+0.1
2,061,370	+				-1.1
2,061,370	+				+0.8
2,061,370	+				-2.4
2,061,370	+				+0.4
2,061,371	-				+1.4
2,061,371	-				-2.4
2,061,371	-				+1.4
2,061,371	-				+0.5
2,061,371	-				+0.1
2,061,371	-				-0.9
2,061,371	-				+0.4
2,061,371	-				-0.9
2,061,371	-				+0.6
2,061,371	-				-0.4
2,061,371	-				+1.9
2,061,371	-				+0.6
2,061,371	-				+0.0
2,061,371	-				-0.6
2,061,371	-				+0.8
2,061,371	-				-1.2
2,061,371	-				+0.4
2,061,371	-				+0.3
2,061,371	-				-1.1
2,061,371	-				-0.6
2,061,418	+		PFLU_RS09315	0.15	-1.7
2,061,418	+		PFLU_RS09315	0.15	-0.4
2,061,418	+		PFLU_RS09315	0.15	-1.6