Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3764

Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
4,883,626	-		BT3763	0.36	-2.1
4,883,662	-		BT3763	0.38	-2.0
4,883,748	-		BT3763	0.44	-0.6
4,883,838	-		BT3763	0.50	-1.4
4,883,887	-		BT3763	0.53	-0.9
4,883,887	-		BT3763	0.53	-1.1
4,883,956	-		BT3763	0.58	+1.2
4,884,216	-		BT3763	0.76	-0.1
4,884,222	+		BT3763	0.76	-2.1
4,884,223	-		BT3763	0.77	-1.3
4,884,349	-		BT3763	0.85	-0.8
4,884,403	-		BT3763	0.89	+1.0
4,884,500	-				-0.8
4,884,535	+				+0.7
4,884,536	-				-0.8
4,884,600	-				-1.3
4,884,615	+				-0.8
4,884,686	-				-1.1
4,884,691	+				-1.6
4,884,691	+				-1.8
4,884,692	-				+0.7
4,884,804	-		BT3764	0.14	-1.6
4,884,804	-		BT3764	0.14	-2.4
4,884,883	-		BT3764	0.21	-1.8
4,884,938	+		BT3764	0.25	+0.2
4,884,962	-		BT3764	0.27	-2.5
4,885,008	-		BT3764	0.31	-2.1
4,885,113	-		BT3764	0.39	-2.2
4,885,170	-		BT3764	0.43	-0.7
4,885,206	-		BT3764	0.46	-1.6
4,885,277	+		BT3764	0.52	+0.7
4,885,333	-		BT3764	0.56	-1.5
4,885,333	-		BT3764	0.56	-1.9
4,885,334	+		BT3764	0.56	-1.8
4,885,334	+		BT3764	0.56	-1.0
4,885,340	-		BT3764	0.57	-2.6
4,885,356	+		BT3764	0.58	-0.8
4,885,383	-		BT3764	0.60	-1.2
4,885,390	+		BT3764	0.61	-0.4
4,885,391	-		BT3764	0.61	-2.2
4,885,441	+		BT3764	0.65	-1.1
4,885,535	+		BT3764	0.72	-2.8
4,885,616	+		BT3764	0.79	-0.8
4,885,617	-		BT3764	0.79	-0.8
4,885,635	+		BT3764	0.80	-0.3
4,885,636	-		BT3764	0.81	+0.4
4,885,640	+		BT3764	0.81	-0.9
4,885,783	+				-0.3
4,885,791	-				-0.1
4,885,791	-				+0.0
4,885,894	+				-1.4
4,885,894	+				-0.0
4,885,894	+				-3.4
4,885,895	-				-2.9
4,885,912	+				-1.4
4,885,913	-				+0.2
4,885,944	+				-1.1
4,885,948	+				-0.6
4,885,949	-				-1.3
4,886,112	+		BT3765	0.22	-0.8
4,886,198	-		BT3765	0.31	-2.2
4,886,202	-		BT3765	0.31	-2.1
4,886,295	-		BT3765	0.40	-1.4
4,886,315	+		BT3765	0.42	-0.9
4,886,318	-		BT3765	0.43	-0.8
4,886,600	+		BT3765	0.70	-1.4
4,886,600	+		BT3765	0.70	-1.6
4,886,601	-		BT3765	0.70	-1.6
4,886,679	+		BT3765	0.78	-1.0
4,886,679	+		BT3765	0.78	-1.1
4,886,681	+		BT3765	0.78	-1.1
4,886,682	-				-1.1
4,886,682	-		BT3765	0.78	+0.2
4,886,757	-		BT3765	0.86	-0.1
4,886,777	-		BT3765	0.88	-1.2
4,886,786	+		BT3765	0.88	-0.4
4,886,792	-		BT3765	0.89	-2.9