Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3187

Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
4,075,335	-		BT3186	0.38	+3.8
4,075,469	-		BT3186	0.48	-1.2
4,075,504	-		BT3186	0.51	-0.8
4,075,517	+		BT3186	0.52	-0.8
4,075,518	-		BT3186	0.52	-0.4
4,075,549	+		BT3186	0.54	-0.7
4,075,787	+		BT3186	0.72	-1.7
4,075,787	+		BT3186	0.72	-1.7
4,075,794	+		BT3186	0.72	+2.0
4,075,831	-		BT3186	0.75	+0.2
4,075,848	+		BT3186	0.76	+0.3
4,075,908	+		BT3186	0.81	+1.0
4,075,913	+		BT3186	0.81	-1.6
4,075,914	+		BT3186	0.81	+1.7
4,075,914	+		BT3186	0.81	-1.1
4,075,915	-		BT3186	0.81	+2.5
4,075,939	+		BT3186	0.83	-0.2
4,075,992	-		BT3186	0.87	-0.7
4,076,130	+				-0.9
4,076,160	-				+0.2
4,076,160	-				+0.2
4,076,191	-				-0.3
4,076,233	+				-0.9
4,076,262	+				-0.9
4,076,282	-				-0.1
4,076,308	+				-0.7
4,076,416	+		BT3187	0.12	-0.3
4,076,416	+		BT3187	0.12	-0.0
4,076,416	+		BT3187	0.12	+1.3
4,076,417	-		BT3187	0.12	+0.2
4,076,417	-		BT3187	0.12	-0.5
4,076,417	-		BT3187	0.12	+0.9
4,076,418	+		BT3187	0.12	-0.2
4,076,420	+		BT3187	0.12	-1.3
4,076,456	+		BT3187	0.14	-1.4
4,076,456	+		BT3187	0.14	-1.2
4,076,555	+		BT3187	0.21	-0.8
4,076,556	-		BT3187	0.22	+1.7
4,076,556	-		BT3187	0.22	-1.0
4,076,574	+		BT3187	0.23	-0.3
4,076,574	+		BT3187	0.23	-1.2
4,076,639	-		BT3187	0.27	-1.0
4,076,676	+		BT3187	0.30	-0.8
4,076,748	+		BT3187	0.35	-1.0
4,076,757	+		BT3187	0.36	+1.3
4,076,758	-		BT3187	0.36	-1.2
4,076,758	-		BT3187	0.36	-1.0
4,076,759	+		BT3187	0.36	+0.2
4,076,759	+		BT3187	0.36	-0.6
4,076,759	+		BT3187	0.36	-2.2
4,076,760	-		BT3187	0.36	-0.5
4,076,760	-		BT3187	0.36	-0.6
4,076,818	+		BT3187	0.40	+0.3
4,076,819	-		BT3187	0.40	-0.3
4,076,819	-		BT3187	0.40	-1.5
4,076,829	-		BT3187	0.41	-0.4
4,076,866	-		BT3187	0.44	-1.0
4,076,868	-		BT3187	0.44	+0.3
4,076,894	+		BT3187	0.46	-0.3
4,076,894	+		BT3187	0.46	+2.0
4,076,894	+		BT3187	0.46	-0.1
4,076,894	+		BT3187	0.46	-0.0
4,076,894	+		BT3187	0.46	-1.0
4,076,913	+		BT3187	0.47	-0.9
4,076,948	+		BT3187	0.49	-0.9
4,076,948	+		BT3187	0.49	-1.5
4,076,959	+		BT3187	0.50	-0.1
4,077,054	-		BT3187	0.57	-2.7
4,077,078	+		BT3187	0.59	-0.6
4,077,095	-		BT3187	0.60	-1.3
4,077,221	+		BT3187	0.69	-1.0
4,077,281	+		BT3187	0.73	-0.2
4,077,335	+		BT3187	0.77	-1.7
4,077,342	-		BT3187	0.77	-3.1
4,077,342	-		BT3187	0.77	+1.3
4,077,342	-		BT3187	0.77	-0.0
4,077,346	-		BT3187	0.78	+0.3
4,077,417	+		BT3187	0.83	-0.8
4,077,419	+		BT3187	0.83	-0.2
4,077,420	-		BT3187	0.83	-2.0
4,077,443	-		BT3187	0.85	-0.6
4,077,474	-				+1.3
4,077,563	+				-0.4
4,077,563	+				-1.3
4,077,564	-				-0.3
4,077,686	-				-0.5
4,077,694	+				+0.3
4,077,699	-				-1.5
4,077,771	+				-0.7
4,077,772	-				+0.3
4,077,792	-				-2.1
4,077,807	-				-0.2
4,077,831	-				-2.0
4,077,831	-				-0.5
4,077,831	-				-0.4
4,077,831	-				-0.0
4,077,840	-				-0.5
4,077,847	+				-1.9
4,077,848	-				-0.3
4,077,848	-				-3.1
4,077,848	-				-0.9
4,077,853	-				-0.9
4,077,853	-				-1.3
4,077,864	-				-0.6
4,077,958	+		BT3188	0.13	+0.5
4,077,959	-		BT3188	0.13	+1.0
4,077,994	+		BT3188	0.16	+0.7
4,078,026	+		BT3188	0.18	+1.9
4,078,044	-		BT3188	0.20	-1.6
4,078,044	-		BT3188	0.20	-1.3
4,078,101	+		BT3188	0.25	-1.3
4,078,105	+		BT3188	0.25	+1.3
4,078,106	-		BT3188	0.25	-1.9
4,078,123	-		BT3188	0.27	+0.5
4,078,150	-		BT3188	0.29	-0.8
4,078,167	+		BT3188	0.30	-0.7
4,078,168	-		BT3188	0.30	-0.8
4,078,174	-		BT3188	0.31	-0.1
4,078,174	-		BT3188	0.31	+1.3
4,078,207	+		BT3188	0.34	+1.3
4,078,208	-		BT3188	0.34	-0.3
4,078,208	-		BT3188	0.34	-2.9
4,078,210	-		BT3188	0.34	-2.7
4,078,230	+		BT3188	0.36	-1.5
4,078,279	+		BT3188	0.40	-0.7
4,078,280	-		BT3188	0.40	-1.0
4,078,301	-		BT3188	0.42	-1.3
4,078,301	-		BT3188	0.42	-2.7
4,078,343	+		BT3188	0.45	-0.4
4,078,344	-		BT3188	0.45	-2.1
4,078,344	-		BT3188	0.45	-1.0
4,078,344	-		BT3188	0.45	+0.4
4,078,348	-		BT3188	0.46	+0.3
4,078,379	-		BT3188	0.48	-0.8
4,078,436	+		BT3188	0.53	-0.4
4,078,456	-		BT3188	0.55	-1.5
4,078,518	+		BT3188	0.60	-0.7
4,078,567	-		BT3188	0.64	-1.3
4,078,568	+		BT3188	0.64	-0.4
4,078,568	+		BT3188	0.64	-0.3
4,078,575	+		BT3188	0.65	-1.2
4,078,576	-		BT3188	0.65	-3.8
4,078,588	-		BT3188	0.66	+0.4
4,078,588	-		BT3188	0.66	-2.7
4,078,603	+		BT3188	0.67	-1.7
4,078,604	-		BT3188	0.67	-1.4
4,078,604	-		BT3188	0.67	+0.7
4,078,606	-		BT3188	0.68	-0.1
4,078,655	+		BT3188	0.72	-1.4
4,078,655	+		BT3188	0.72	-2.0
4,078,656	-		BT3188	0.72	-0.8
4,078,656	-		BT3188	0.72	-2.0
4,078,657	+		BT3188	0.72	-1.0
4,078,658	-		BT3188	0.72	-1.3
4,078,659	+		BT3188	0.72	-2.7