Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1088

Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
1,374,518	+		BT1087	0.51	-1.7
1,374,521	-		BT1087	0.52	-0.2
1,374,629	+		BT1087	0.59	+0.2
1,374,629	+		BT1087	0.59	-1.0
1,374,794	+		BT1087	0.69	-1.0
1,374,812	+		BT1087	0.70	+0.3
1,374,909	-		BT1087	0.77	-0.2
1,374,909	-		BT1087	0.77	+2.3
1,374,910	+		BT1087	0.77	-0.7
1,374,910	+		BT1087	0.77	-1.8
1,374,911	-		BT1087	0.77	-1.0
1,375,116	+				-0.3
1,375,132	+				-1.2
1,375,242	+				-0.2
1,375,243	-				+0.0
1,375,301	+				-1.0
1,375,504	+		BT1088	0.24	+1.5
1,375,515	-		BT1088	0.25	-0.2
1,375,792	+		BT1088	0.55	+1.1
1,376,092	+		BT1088	0.87	+0.8
1,376,212	+				-1.8
1,376,419	+		BT1089	0.21	-0.4
1,376,421	+		BT1089	0.22	-0.7
1,376,421	+		BT1089	0.22	-1.1
1,376,422	-		BT1089	0.22	-0.2
1,376,422	-		BT1089	0.22	+1.8
1,376,479	-		BT1089	0.30	-0.1
1,376,527	+		BT1089	0.37	-0.2
1,376,583	+		BT1089	0.45	-1.0
1,376,584	-		BT1089	0.45	-0.2
1,376,600	+		BT1089	0.48	+0.3
1,376,681	+		BT1089	0.60	-2.6
1,376,701	-		BT1089	0.63	-0.2
1,376,779	+		BT1089	0.74	-0.2
1,376,807	-		BT1089	0.78	+1.8
1,376,809	-		BT1089	0.78	-1.4
1,376,833	+		BT1089	0.82	+0.1
1,376,848	-		BT1089	0.84	+1.3
1,376,920	-				+0.8
1,376,942	+				-2.0
1,376,990	+				-1.8
1,377,009	+				+0.3
1,377,033	-				-0.4
1,377,068	+				-1.7
1,377,105	-				-1.7
1,377,156	+				+0.8