Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0445 and BT0446 are separated by 656 nucleotides BT0446 and BT0447 overlap by 4 nucleotides
BT0445: BT0445 - endoglucanase E precursor (EGE) (NCBI ptt file), at 540,038 to 541,138
BT0445
BT0446: BT0446 - conserved hypothetical protein (NCBI ptt file), at 541,795 to 543,204
BT0446
BT0447: BT0447 - S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase (NCBI ptt file), at 543,201 to 545,855
BT0447
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 540.811 kb on + strand, within BT0445 at 540.812 kb on - strand, within BT0445 at 540.813 kb on + strand, within BT0445 at 540.814 kb on - strand, within BT0445 at 540.814 kb on - strand, within BT0445 at 540.845 kb on + strand, within BT0445 at 540.847 kb on + strand, within BT0445 at 540.848 kb on - strand, within BT0445 at 540.855 kb on + strand, within BT0445 at 540.856 kb on - strand, within BT0445 at 540.858 kb on + strand, within BT0445 at 540.892 kb on + strand, within BT0445 at 540.893 kb on - strand, within BT0445 at 540.897 kb on + strand, within BT0445 at 540.897 kb on + strand, within BT0445 at 540.939 kb on - strand, within BT0445 at 540.980 kb on + strand, within BT0445 at 540.982 kb on + strand, within BT0445 at 541.072 kb on + strand at 541.153 kb on + strand at 541.155 kb on + strand at 541.411 kb on + strand at 541.455 kb on + strand at 541.500 kb on + strand at 541.545 kb on - strand at 541.611 kb on - strand at 541.626 kb on + strand at 541.673 kb on - strand at 541.747 kb on + strand at 541.779 kb on + strand at 541.784 kb on - strand at 541.822 kb on - strand at 542.050 kb on + strand, within BT0446 at 542.225 kb on - strand, within BT0446 at 542.249 kb on - strand, within BT0446 at 542.292 kb on + strand, within BT0446 at 542.293 kb on - strand, within BT0446 at 542.336 kb on - strand, within BT0446 at 542.364 kb on - strand, within BT0446 at 542.364 kb on - strand, within BT0446 at 542.420 kb on + strand, within BT0446 at 542.501 kb on + strand, within BT0446 at 542.569 kb on + strand, within BT0446 at 542.664 kb on + strand, within BT0446 at 542.744 kb on - strand, within BT0446 at 542.915 kb on - strand, within BT0446 at 542.936 kb on + strand, within BT0446 at 542.938 kb on + strand, within BT0446 at 542.976 kb on + strand, within BT0446 at 542.976 kb on + strand, within BT0446 at 543.038 kb on - strand, within BT0446 at 543.045 kb on + strand, within BT0446 at 543.046 kb on - strand, within BT0446 at 543.046 kb on - strand, within BT0446 at 543.073 kb on - strand at 543.135 kb on + strand at 543.264 kb on - strand at 543.279 kb on + strand at 543.366 kb on - strand at 543.423 kb on + strand at 543.424 kb on - strand at 543.430 kb on + strand at 543.536 kb on - strand, within BT0447 at 543.543 kb on + strand, within BT0447 at 543.544 kb on - strand, within BT0447 at 543.544 kb on - strand, within BT0447 at 543.643 kb on + strand, within BT0447 at 543.644 kb on - strand, within BT0447 at 543.746 kb on + strand, within BT0447 at 543.865 kb on + strand, within BT0447 at 544.036 kb on + strand, within BT0447 at 544.040 kb on + strand, within BT0447 at 544.084 kb on + strand, within BT0447 at 544.116 kb on - strand, within BT0447 at 544.158 kb on + strand, within BT0447 at 544.158 kb on + strand, within BT0447 at 544.158 kb on + strand, within BT0447
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml remove 540,811 + BT0445 0.70 -0.0 540,812 - BT0445 0.70 -0.7 540,813 + BT0445 0.70 -1.7 540,814 - BT0445 0.70 +2.9 540,814 - BT0445 0.70 +0.7 540,845 + BT0445 0.73 -0.3 540,847 + BT0445 0.73 -2.6 540,848 - BT0445 0.74 -0.3 540,855 + BT0445 0.74 -0.3 540,856 - BT0445 0.74 +1.3 540,858 + BT0445 0.74 -0.7 540,892 + BT0445 0.78 +1.3 540,893 - BT0445 0.78 -0.3 540,897 + BT0445 0.78 -0.6 540,897 + BT0445 0.78 -1.3 540,939 - BT0445 0.82 +1.3 540,980 + BT0445 0.86 +0.3 540,982 + BT0445 0.86 -1.0 541,072 + +0.3 541,153 + -1.8 541,155 + +2.4 541,411 + -2.3 541,455 + -1.2 541,500 + -2.6 541,545 - +0.5 541,611 - -0.7 541,626 + +0.7 541,673 - +0.2 541,747 + -1.5 541,779 + -2.0 541,784 - -1.9 541,822 - -0.5 542,050 + BT0446 0.18 -1.0 542,225 - BT0446 0.30 +0.3 542,249 - BT0446 0.32 -1.1 542,292 + BT0446 0.35 -1.0 542,293 - BT0446 0.35 -1.3 542,336 - BT0446 0.38 -1.0 542,364 - BT0446 0.40 -2.0 542,364 - BT0446 0.40 -1.3 542,420 + BT0446 0.44 -2.9 542,501 + BT0446 0.50 +0.3 542,569 + BT0446 0.55 +0.3 542,664 + BT0446 0.62 -0.7 542,744 - BT0446 0.67 -1.0 542,915 - BT0446 0.79 -0.8 542,936 + BT0446 0.81 -1.1 542,938 + BT0446 0.81 -1.5 542,976 + BT0446 0.84 +0.3 542,976 + BT0446 0.84 +1.1 543,038 - BT0446 0.88 -0.4 543,045 + BT0446 0.89 -0.8 543,046 - BT0446 0.89 +0.1 543,046 - BT0446 0.89 -0.3 543,073 - -2.5 543,135 + -1.1 543,264 - +1.3 543,279 + -0.4 543,366 - +1.7 543,423 + -0.5 543,424 - +0.3 543,430 + -2.1 543,536 - BT0447 0.13 -0.5 543,543 + BT0447 0.13 -0.3 543,544 - BT0447 0.13 +1.7 543,544 - BT0447 0.13 -2.4 543,643 + BT0447 0.17 +0.3 543,644 - BT0447 0.17 +0.1 543,746 + BT0447 0.21 +1.3 543,865 + BT0447 0.25 -0.7 544,036 + BT0447 0.31 -0.3 544,040 + BT0447 0.32 -0.0 544,084 + BT0447 0.33 -1.9 544,116 - BT0447 0.34 -0.0 544,158 + BT0447 0.36 -1.2 544,158 + BT0447 0.36 -0.6 544,158 + BT0447 0.36 -1.7
Or see this region's nucleotide sequence