Experiment: Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0235 and BT0236 are separated by 268 nucleotides BT0236 and BT0237 are separated by 108 nucleotides
BT0235: BT0235 - conserved hypothetical protein (NCBI ptt file), at 256,382 to 257,509
BT0235
BT0236: BT0236 - conserved hypothetical protein (NCBI ptt file), at 257,778 to 259,826
BT0236
BT0237: BT0237 - conserved hypothetical protein (NCBI ptt file), at 259,935 to 262,022
BT0237
Position (kb) 257
258
259
260 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 256.801 kb on - strand, within BT0235 at 256.880 kb on - strand, within BT0235 at 257.015 kb on + strand, within BT0235 at 257.016 kb on - strand, within BT0235 at 257.018 kb on - strand, within BT0235 at 257.064 kb on + strand, within BT0235 at 257.257 kb on - strand, within BT0235 at 257.291 kb on - strand, within BT0235 at 257.375 kb on + strand, within BT0235 at 257.376 kb on - strand at 257.376 kb on - strand, within BT0235 at 257.495 kb on + strand at 257.527 kb on + strand at 257.561 kb on - strand at 257.665 kb on + strand at 257.665 kb on + strand at 257.666 kb on - strand at 257.667 kb on + strand at 257.672 kb on + strand at 257.673 kb on - strand at 257.802 kb on - strand at 257.822 kb on - strand at 257.838 kb on + strand at 257.839 kb on - strand at 257.843 kb on + strand at 257.844 kb on - strand at 257.857 kb on - strand at 257.941 kb on - strand at 257.941 kb on - strand at 257.988 kb on - strand, within BT0236 at 257.997 kb on - strand, within BT0236 at 258.062 kb on - strand, within BT0236 at 258.062 kb on - strand, within BT0236 at 258.123 kb on - strand, within BT0236 at 258.276 kb on + strand, within BT0236 at 258.276 kb on + strand, within BT0236 at 258.282 kb on - strand, within BT0236 at 258.384 kb on + strand, within BT0236 at 258.385 kb on - strand, within BT0236 at 258.385 kb on - strand, within BT0236 at 258.389 kb on + strand, within BT0236 at 258.394 kb on - strand, within BT0236 at 258.465 kb on + strand, within BT0236 at 258.477 kb on + strand at 258.480 kb on - strand, within BT0236 at 258.501 kb on + strand, within BT0236 at 258.502 kb on - strand, within BT0236 at 258.701 kb on + strand, within BT0236 at 258.792 kb on - strand, within BT0236 at 258.799 kb on - strand, within BT0236 at 258.799 kb on - strand, within BT0236 at 258.904 kb on - strand, within BT0236 at 258.959 kb on + strand, within BT0236 at 258.960 kb on - strand, within BT0236 at 258.960 kb on - strand, within BT0236 at 259.033 kb on - strand, within BT0236 at 259.047 kb on - strand, within BT0236 at 259.056 kb on - strand, within BT0236 at 259.064 kb on + strand, within BT0236 at 259.238 kb on - strand, within BT0236 at 259.313 kb on + strand, within BT0236 at 259.400 kb on + strand, within BT0236 at 259.433 kb on + strand, within BT0236 at 259.475 kb on - strand, within BT0236 at 259.489 kb on + strand, within BT0236 at 259.546 kb on - strand, within BT0236 at 259.655 kb on + strand at 259.656 kb on - strand at 259.786 kb on + strand at 259.869 kb on - strand at 259.918 kb on - strand at 259.918 kb on - strand at 260.025 kb on - strand at 260.054 kb on + strand at 260.054 kb on + strand at 260.181 kb on - strand, within BT0237 at 260.193 kb on + strand, within BT0237 at 260.194 kb on - strand, within BT0237 at 260.201 kb on - strand, within BT0237 at 260.225 kb on + strand, within BT0237 at 260.288 kb on + strand, within BT0237 at 260.312 kb on + strand, within BT0237 at 260.356 kb on + strand, within BT0237 at 260.356 kb on + strand, within BT0237 at 260.550 kb on + strand, within BT0237 at 260.611 kb on + strand, within BT0237 at 260.611 kb on + strand, within BT0237 at 260.611 kb on + strand, within BT0237 at 260.615 kb on + strand, within BT0237 at 260.669 kb on - strand, within BT0237 at 260.755 kb on + strand, within BT0237
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Indolicidin 0.002 mg/ml remove 256,801 - BT0235 0.37 -0.4 256,880 - BT0235 0.44 -1.8 257,015 + BT0235 0.56 -0.7 257,016 - BT0235 0.56 +0.6 257,018 - BT0235 0.56 -0.1 257,064 + BT0235 0.60 -0.3 257,257 - BT0235 0.78 -1.0 257,291 - BT0235 0.81 -1.9 257,375 + BT0235 0.88 -0.7 257,376 - -1.0 257,376 - BT0235 0.88 -0.3 257,495 + -1.7 257,527 + -0.3 257,561 - -0.3 257,665 + -0.8 257,665 + +1.3 257,666 - -0.3 257,667 + -1.0 257,672 + -1.0 257,673 - -0.2 257,802 - -2.5 257,822 - -1.5 257,838 + +0.7 257,839 - -1.7 257,843 + -0.6 257,844 - -2.6 257,857 - +0.7 257,941 - -2.4 257,941 - -0.3 257,988 - BT0236 0.10 -1.3 257,997 - BT0236 0.11 -2.0 258,062 - BT0236 0.14 +0.3 258,062 - BT0236 0.14 -2.2 258,123 - BT0236 0.17 -1.3 258,276 + BT0236 0.24 -0.5 258,276 + BT0236 0.24 -0.7 258,282 - BT0236 0.25 +1.3 258,384 + BT0236 0.30 -1.5 258,385 - BT0236 0.30 -2.8 258,385 - BT0236 0.30 -1.3 258,389 + BT0236 0.30 -0.7 258,394 - BT0236 0.30 +0.3 258,465 + BT0236 0.34 -2.3 258,477 + -1.3 258,480 - BT0236 0.34 -1.6 258,501 + BT0236 0.35 -2.0 258,502 - BT0236 0.35 -2.2 258,701 + BT0236 0.45 +0.3 258,792 - BT0236 0.49 -1.3 258,799 - BT0236 0.50 -2.0 258,799 - BT0236 0.50 -2.1 258,904 - BT0236 0.55 -1.5 258,959 + BT0236 0.58 +0.3 258,960 - BT0236 0.58 -0.3 258,960 - BT0236 0.58 -2.7 259,033 - BT0236 0.61 -1.5 259,047 - BT0236 0.62 -0.7 259,056 - BT0236 0.62 -1.3 259,064 + BT0236 0.63 -0.5 259,238 - BT0236 0.71 -0.9 259,313 + BT0236 0.75 -0.6 259,400 + BT0236 0.79 +1.3 259,433 + BT0236 0.81 -1.2 259,475 - BT0236 0.83 +0.3 259,489 + BT0236 0.84 -0.7 259,546 - BT0236 0.86 -0.7 259,655 + -0.2 259,656 - -0.3 259,786 + -1.0 259,869 - -0.9 259,918 - +0.3 259,918 - -1.3 260,025 - -0.3 260,054 + +1.3 260,054 + +0.3 260,181 - BT0237 0.12 -2.3 260,193 + BT0237 0.12 +0.3 260,194 - BT0237 0.12 -0.7 260,201 - BT0237 0.13 -2.0 260,225 + BT0237 0.14 -1.4 260,288 + BT0237 0.17 -1.3 260,312 + BT0237 0.18 -2.0 260,356 + BT0237 0.20 -3.0 260,356 + BT0237 0.20 +0.3 260,550 + BT0237 0.29 -2.0 260,611 + BT0237 0.32 -2.2 260,611 + BT0237 0.32 -2.3 260,611 + BT0237 0.32 -3.0 260,615 + BT0237 0.33 -2.6 260,669 - BT0237 0.35 -0.7 260,755 + BT0237 0.39 -0.7
Or see this region's nucleotide sequence