Strain Fitness in Shewanella oneidensis MR-1 around SO0737

Experiment: Ferric citrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0736 and SO0737 are separated by 297 nucleotidesSO0737 and SO0737.1 are separated by 227 nucleotidesSO0737.1 and SO_0738 overlap by 1 nucleotides SO0736: SO0736 - conserved hypothetical protein (NCBI ptt file), at 750,477 to 751,271 SO0736 SO0737: SO0737 - TonB-dependent receptor, putative (NCBI ptt file), at 751,569 to 753,647 SO0737 SO0737.1: SO0737.1 - hypothetical alkaline phosphatase (NCBI ptt file), at 753,875 to 754,522 SO0737.1 SO_0738: SO_0738 - no description, at 754,522 to 755,379 _0738 Position (kb) 751 752 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 750.573 kb on - strand, within SO0736at 750.615 kb on + strand, within SO0736at 750.629 kb on - strand, within SO0736at 750.747 kb on + strand, within SO0736at 750.768 kb on + strand, within SO0736at 750.838 kb on + strand, within SO0736at 750.838 kb on + strand, within SO0736at 750.846 kb on - strand, within SO0736at 750.848 kb on - strand, within SO0736at 750.997 kb on + strand, within SO0736at 751.193 kb on - strandat 751.198 kb on - strandat 751.297 kb on + strandat 751.297 kb on + strandat 751.305 kb on - strandat 751.305 kb on - strandat 751.305 kb on - strandat 751.308 kb on - strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.364 kb on - strandat 751.364 kb on - strandat 751.366 kb on - strandat 751.568 kb on + strandat 751.587 kb on + strandat 751.587 kb on + strandat 751.628 kb on + strandat 751.638 kb on - strandat 751.662 kb on + strandat 751.698 kb on - strandat 751.833 kb on + strand, within SO0737at 751.833 kb on + strand, within SO0737at 751.833 kb on + strand, within SO0737at 751.841 kb on - strand, within SO0737at 751.841 kb on - strand, within SO0737at 751.858 kb on - strand, within SO0737at 751.879 kb on + strand, within SO0737at 751.879 kb on + strand, within SO0737at 751.879 kb on + strand, within SO0737at 751.885 kb on + strand, within SO0737at 751.885 kb on + strand, within SO0737at 751.939 kb on + strand, within SO0737at 751.964 kb on - strand, within SO0737at 751.964 kb on - strand, within SO0737at 751.969 kb on - strand, within SO0737at 752.075 kb on - strand, within SO0737at 752.116 kb on + strand, within SO0737at 752.124 kb on - strand, within SO0737at 752.124 kb on - strand, within SO0737at 752.124 kb on - strand, within SO0737at 752.124 kb on - strand, within SO0737at 752.124 kb on - strand, within SO0737at 752.124 kb on - strand, within SO0737at 752.124 kb on - strand, within SO0737at 752.149 kb on - strand, within SO0737at 752.169 kb on + strand, within SO0737at 752.177 kb on - strand, within SO0737at 752.287 kb on - strand, within SO0737at 752.330 kb on + strand, within SO0737at 752.365 kb on + strand, within SO0737at 752.365 kb on + strand, within SO0737at 752.365 kb on + strand, within SO0737at 752.373 kb on - strand, within SO0737at 752.572 kb on + strand, within SO0737at 752.584 kb on + strand, within SO0737at 752.638 kb on + strand, within SO0737at 752.644 kb on + strand, within SO0737at 752.706 kb on + strand, within SO0737at 752.708 kb on + strand, within SO0737at 752.716 kb on + strand, within SO0737at 752.730 kb on - strand, within SO0737at 752.756 kb on + strand, within SO0737at 752.860 kb on - strand, within SO0737at 752.876 kb on + strand, within SO0737at 752.877 kb on + strand, within SO0737at 752.999 kb on + strand, within SO0737at 753.112 kb on + strand, within SO0737at 753.124 kb on + strand, within SO0737at 753.157 kb on + strand, within SO0737at 753.182 kb on + strand, within SO0737at 753.257 kb on - strand, within SO0737at 753.373 kb on + strand, within SO0737at 753.422 kb on + strand, within SO0737at 753.430 kb on - strand, within SO0737at 753.430 kb on - strand, within SO0737at 753.430 kb on - strand, within SO0737at 753.451 kb on + strandat 753.451 kb on + strandat 753.459 kb on - strandat 753.470 kb on + strandat 753.601 kb on + strandat 753.620 kb on - strandat 753.649 kb on + strandat 753.702 kb on - strandat 753.940 kb on - strand, within SO0737.1at 753.953 kb on - strand, within SO0737.1at 753.958 kb on - strand, within SO0737.1at 753.958 kb on - strand, within SO0737.1at 753.988 kb on + strand, within SO0737.1at 753.989 kb on - strand, within SO0737.1at 754.125 kb on - strand, within SO0737.1at 754.194 kb on - strand, within SO0737.1at 754.210 kb on + strand, within SO0737.1at 754.214 kb on + strand, within SO0737.1at 754.223 kb on - strand, within SO0737.1at 754.248 kb on + strand, within SO0737.1at 754.248 kb on + strand, within SO0737.1at 754.255 kb on + strand, within SO0737.1at 754.268 kb on + strand, within SO0737.1at 754.468 kb on - strandat 754.528 kb on + strandat 754.564 kb on + strandat 754.610 kb on + strand, within SO_0738at 754.613 kb on - strand, within SO_0738at 754.628 kb on - strand, within SO_0738at 754.628 kb on - strand, within SO_0738

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor
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750,573 - SO0736 0.12 -1.3
750,615 + SO0736 0.17 -0.3
750,629 - SO0736 0.19 +1.2
750,747 + SO0736 0.34 -1.4
750,768 + SO0736 0.37 -0.6
750,838 + SO0736 0.45 +0.8
750,838 + SO0736 0.45 +0.2
750,846 - SO0736 0.46 +1.3
750,848 - SO0736 0.47 -3.4
750,997 + SO0736 0.65 +0.2
751,193 - +0.2
751,198 - -1.3
751,297 + +0.5
751,297 + -0.1
751,305 - +0.1
751,305 - -0.5
751,305 - +0.3
751,308 - -2.8
751,356 + -0.8
751,356 + -0.4
751,356 + -1.7
751,356 + +0.5
751,356 + +0.0
751,356 + +0.6
751,356 + +0.5
751,356 + -2.3
751,356 + -1.5
751,364 - -1.5
751,364 - +0.9
751,366 - -1.3
751,568 + -0.6
751,587 + +1.2
751,587 + +0.5
751,628 + -1.6
751,638 - +1.5
751,662 + +0.0
751,698 - -0.1
751,833 + SO0737 0.13 -0.7
751,833 + SO0737 0.13 +0.9
751,833 + SO0737 0.13 -0.1
751,841 - SO0737 0.13 -0.3
751,841 - SO0737 0.13 -0.5
751,858 - SO0737 0.14 +0.7
751,879 + SO0737 0.15 -0.6
751,879 + SO0737 0.15 -0.1
751,879 + SO0737 0.15 +0.3
751,885 + SO0737 0.15 +0.5
751,885 + SO0737 0.15 +0.1
751,939 + SO0737 0.18 -3.3
751,964 - SO0737 0.19 -0.3
751,964 - SO0737 0.19 +0.4
751,969 - SO0737 0.19 +1.2
752,075 - SO0737 0.24 -2.0
752,116 + SO0737 0.26 -1.0
752,124 - SO0737 0.27 -0.5
752,124 - SO0737 0.27 +0.0
752,124 - SO0737 0.27 -0.1
752,124 - SO0737 0.27 -0.4
752,124 - SO0737 0.27 -0.7
752,124 - SO0737 0.27 +3.4
752,124 - SO0737 0.27 +0.8
752,149 - SO0737 0.28 +0.5
752,169 + SO0737 0.29 -0.9
752,177 - SO0737 0.29 +1.7
752,287 - SO0737 0.35 +0.4
752,330 + SO0737 0.37 -0.7
752,365 + SO0737 0.38 +0.3
752,365 + SO0737 0.38 -0.0
752,365 + SO0737 0.38 +0.1
752,373 - SO0737 0.39 +0.1
752,572 + SO0737 0.48 -1.5
752,584 + SO0737 0.49 +0.4
752,638 + SO0737 0.51 +0.3
752,644 + SO0737 0.52 +1.4
752,706 + SO0737 0.55 +2.1
752,708 + SO0737 0.55 +0.8
752,716 + SO0737 0.55 -0.1
752,730 - SO0737 0.56 -2.6
752,756 + SO0737 0.57 -2.3
752,860 - SO0737 0.62 +0.7
752,876 + SO0737 0.63 +0.4
752,877 + SO0737 0.63 +0.2
752,999 + SO0737 0.69 -0.5
753,112 + SO0737 0.74 -3.3
753,124 + SO0737 0.75 -1.7
753,157 + SO0737 0.76 +2.0
753,182 + SO0737 0.78 +0.7
753,257 - SO0737 0.81 -0.5
753,373 + SO0737 0.87 +0.3
753,422 + SO0737 0.89 +1.7
753,430 - SO0737 0.90 -0.3
753,430 - SO0737 0.90 -0.6
753,430 - SO0737 0.90 +0.8
753,451 + +0.5
753,451 + -2.5
753,459 - -0.8
753,470 + +0.6
753,601 + -2.3
753,620 - +2.4
753,649 + +0.8
753,702 - -2.0
753,940 - SO0737.1 0.10 -0.5
753,953 - SO0737.1 0.12 -1.4
753,958 - SO0737.1 0.13 +1.0
753,958 - SO0737.1 0.13 -0.0
753,988 + SO0737.1 0.17 +0.3
753,989 - SO0737.1 0.18 -0.4
754,125 - SO0737.1 0.39 -2.3
754,194 - SO0737.1 0.49 -2.3
754,210 + SO0737.1 0.52 -0.3
754,214 + SO0737.1 0.52 +0.4
754,223 - SO0737.1 0.54 +0.2
754,248 + SO0737.1 0.58 -1.7
754,248 + SO0737.1 0.58 +0.8
754,255 + SO0737.1 0.59 -0.7
754,268 + SO0737.1 0.61 -0.4
754,468 - -0.4
754,528 + -0.8
754,564 + +1.0
754,610 + SO_0738 0.10 +0.9
754,613 - SO_0738 0.11 +0.6
754,628 - SO_0738 0.12 +0.8
754,628 - SO_0738 0.12 -1.0

Or see this region's nucleotide sequence