Experiment: KB with Fumarprotocetraric Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4199 and Psyr_4200 are separated by 63 nucleotides Psyr_4200 and Psyr_4201 overlap by 8 nucleotides Psyr_4201 and Psyr_4202 are separated by 7 nucleotides Psyr_4202 and Psyr_4203 are separated by 80 nucleotides Psyr_4203 and Psyr_4204 are separated by 307 nucleotides
Psyr_4199: Psyr_4199 - SmpA/OmlA, at 4,995,788 to 4,996,309
_4199
Psyr_4200: Psyr_4200 - Protein of unknown function UPF0125, at 4,996,373 to 4,996,687
_4200
Psyr_4201: Psyr_4201 - cyclase/dehydrase, at 4,996,680 to 4,997,114
_4201
Psyr_4202: Psyr_4202 - Sodium:neurotransmitter symporter, at 4,997,122 to 4,998,558
_4202
Psyr_4203: Psyr_4203 - SsrA-binding protein, at 4,998,639 to 4,999,121
_4203
Psyr_4204: Psyr_4204 - conserved hypothetical protein, at 4,999,429 to 4,999,713
_4204
Position (kb) 4997
4998
4999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4996.455 kb on + strand, within Psyr_4200 at 4996.456 kb on - strand, within Psyr_4200 at 4996.523 kb on - strand, within Psyr_4200 at 4996.523 kb on - strand, within Psyr_4200 at 4996.613 kb on + strand, within Psyr_4200 at 4996.614 kb on - strand, within Psyr_4200 at 4996.632 kb on - strand, within Psyr_4200 at 4996.632 kb on - strand, within Psyr_4200 at 4996.632 kb on - strand, within Psyr_4200 at 4996.643 kb on + strand, within Psyr_4200 at 4996.644 kb on - strand, within Psyr_4200 at 4996.653 kb on + strand, within Psyr_4200 at 4996.653 kb on + strand, within Psyr_4200 at 4996.654 kb on - strand, within Psyr_4200 at 4996.654 kb on - strand, within Psyr_4200 at 4996.654 kb on - strand, within Psyr_4200 at 4996.664 kb on + strand at 4996.665 kb on - strand at 4997.101 kb on - strand at 4997.175 kb on - strand at 4997.270 kb on - strand, within Psyr_4202 at 4997.270 kb on - strand, within Psyr_4202 at 4997.272 kb on + strand, within Psyr_4202 at 4997.272 kb on + strand, within Psyr_4202 at 4997.272 kb on + strand, within Psyr_4202 at 4997.273 kb on - strand, within Psyr_4202 at 4997.273 kb on - strand, within Psyr_4202 at 4997.273 kb on - strand, within Psyr_4202 at 4997.367 kb on - strand, within Psyr_4202 at 4997.367 kb on - strand, within Psyr_4202 at 4997.367 kb on - strand, within Psyr_4202 at 4997.418 kb on + strand, within Psyr_4202 at 4997.418 kb on + strand, within Psyr_4202 at 4997.418 kb on + strand, within Psyr_4202 at 4997.419 kb on - strand, within Psyr_4202 at 4997.461 kb on - strand, within Psyr_4202 at 4997.496 kb on + strand, within Psyr_4202 at 4997.517 kb on - strand, within Psyr_4202 at 4997.537 kb on - strand, within Psyr_4202 at 4997.576 kb on - strand, within Psyr_4202 at 4997.628 kb on - strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.786 kb on + strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4997.787 kb on - strand, within Psyr_4202 at 4998.101 kb on + strand, within Psyr_4202 at 4998.102 kb on - strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.161 kb on + strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.162 kb on - strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.189 kb on + strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.190 kb on - strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.191 kb on + strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.192 kb on - strand, within Psyr_4202 at 4998.382 kb on + strand, within Psyr_4202 at 4998.382 kb on + strand, within Psyr_4202 at 4998.383 kb on - strand, within Psyr_4202 at 4998.417 kb on - strand at 4998.417 kb on - strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.624 kb on + strand at 4998.625 kb on - strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.626 kb on + strand at 4998.683 kb on + strand at 4998.702 kb on + strand, within Psyr_4203 at 4998.702 kb on + strand, within Psyr_4203 at 4998.779 kb on - strand, within Psyr_4203 at 4998.795 kb on + strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4998.796 kb on - strand, within Psyr_4203 at 4999.119 kb on + strand at 4999.119 kb on + strand at 4999.120 kb on - strand at 4999.174 kb on + strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.175 kb on - strand at 4999.179 kb on - strand at 4999.179 kb on - strand at 4999.280 kb on + strand at 4999.281 kb on - strand at 4999.291 kb on - strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.306 kb on + strand at 4999.307 kb on - strand at 4999.307 kb on - strand at 4999.414 kb on + strand at 4999.414 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.428 kb on + strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.429 kb on - strand at 4999.548 kb on + strand, within Psyr_4204 at 4999.548 kb on + strand, within Psyr_4204
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fumarprotocetraric Acid 10 mM remove 4,996,455 + Psyr_4200 0.26 -0.1 4,996,456 - Psyr_4200 0.26 +0.4 4,996,523 - Psyr_4200 0.48 -0.6 4,996,523 - Psyr_4200 0.48 -0.8 4,996,613 + Psyr_4200 0.76 -2.3 4,996,614 - Psyr_4200 0.77 +0.9 4,996,632 - Psyr_4200 0.82 -1.6 4,996,632 - Psyr_4200 0.82 +0.8 4,996,632 - Psyr_4200 0.82 +0.2 4,996,643 + Psyr_4200 0.86 +0.6 4,996,644 - Psyr_4200 0.86 -0.5 4,996,653 + Psyr_4200 0.89 -0.5 4,996,653 + Psyr_4200 0.89 +0.3 4,996,654 - Psyr_4200 0.89 -0.4 4,996,654 - Psyr_4200 0.89 -0.2 4,996,654 - Psyr_4200 0.89 +0.3 4,996,664 + -0.6 4,996,665 - +0.8 4,997,101 - -0.7 4,997,175 - +1.2 4,997,270 - Psyr_4202 0.10 +0.2 4,997,270 - Psyr_4202 0.10 +0.0 4,997,272 + Psyr_4202 0.10 -0.9 4,997,272 + Psyr_4202 0.10 +0.9 4,997,272 + Psyr_4202 0.10 +0.2 4,997,273 - Psyr_4202 0.11 -1.1 4,997,273 - Psyr_4202 0.11 -0.7 4,997,273 - Psyr_4202 0.11 +0.7 4,997,367 - Psyr_4202 0.17 +0.5 4,997,367 - Psyr_4202 0.17 -0.2 4,997,367 - Psyr_4202 0.17 +0.1 4,997,418 + Psyr_4202 0.21 -0.4 4,997,418 + Psyr_4202 0.21 -0.2 4,997,418 + Psyr_4202 0.21 -0.5 4,997,419 - Psyr_4202 0.21 +0.1 4,997,461 - Psyr_4202 0.24 +0.2 4,997,496 + Psyr_4202 0.26 -1.8 4,997,517 - Psyr_4202 0.27 +0.2 4,997,537 - Psyr_4202 0.29 +1.1 4,997,576 - Psyr_4202 0.32 -0.2 4,997,628 - Psyr_4202 0.35 -0.4 4,997,786 + Psyr_4202 0.46 -0.1 4,997,786 + Psyr_4202 0.46 -0.2 4,997,786 + Psyr_4202 0.46 -0.6 4,997,786 + Psyr_4202 0.46 -0.8 4,997,786 + Psyr_4202 0.46 -1.4 4,997,786 + Psyr_4202 0.46 -0.8 4,997,787 - Psyr_4202 0.46 -3.2 4,997,787 - Psyr_4202 0.46 +0.2 4,997,787 - Psyr_4202 0.46 +0.2 4,997,787 - Psyr_4202 0.46 -1.0 4,998,101 + Psyr_4202 0.68 +0.6 4,998,102 - Psyr_4202 0.68 +0.2 4,998,161 + Psyr_4202 0.72 -0.4 4,998,161 + Psyr_4202 0.72 -1.4 4,998,161 + Psyr_4202 0.72 -1.6 4,998,161 + Psyr_4202 0.72 -0.2 4,998,161 + Psyr_4202 0.72 +0.1 4,998,161 + Psyr_4202 0.72 -0.4 4,998,162 - Psyr_4202 0.72 -0.6 4,998,162 - Psyr_4202 0.72 -1.4 4,998,162 - Psyr_4202 0.72 -0.4 4,998,162 - Psyr_4202 0.72 +0.2 4,998,162 - Psyr_4202 0.72 +0.4 4,998,162 - Psyr_4202 0.72 -1.4 4,998,162 - Psyr_4202 0.72 -0.5 4,998,162 - Psyr_4202 0.72 -1.2 4,998,189 + Psyr_4202 0.74 +0.1 4,998,189 + Psyr_4202 0.74 -0.4 4,998,189 + Psyr_4202 0.74 -1.1 4,998,189 + Psyr_4202 0.74 +1.6 4,998,190 - Psyr_4202 0.74 +0.2 4,998,190 - Psyr_4202 0.74 +0.9 4,998,190 - Psyr_4202 0.74 -0.1 4,998,191 + Psyr_4202 0.74 -0.8 4,998,191 + Psyr_4202 0.74 -0.0 4,998,191 + Psyr_4202 0.74 +1.5 4,998,191 + Psyr_4202 0.74 -0.9 4,998,191 + Psyr_4202 0.74 -0.5 4,998,191 + Psyr_4202 0.74 -0.6 4,998,191 + Psyr_4202 0.74 +0.7 4,998,191 + Psyr_4202 0.74 +0.4 4,998,192 - Psyr_4202 0.74 +0.2 4,998,192 - Psyr_4202 0.74 -0.8 4,998,192 - Psyr_4202 0.74 -0.0 4,998,382 + Psyr_4202 0.88 +1.2 4,998,382 + Psyr_4202 0.88 -1.1 4,998,383 - Psyr_4202 0.88 -1.5 4,998,417 - -1.0 4,998,417 - -0.8 4,998,624 + +0.5 4,998,624 + +0.1 4,998,624 + -1.2 4,998,624 + -0.1 4,998,625 - -1.1 4,998,626 + -0.5 4,998,626 + -0.9 4,998,626 + -1.9 4,998,683 + -1.8 4,998,702 + Psyr_4203 0.13 -1.4 4,998,702 + Psyr_4203 0.13 -0.8 4,998,779 - Psyr_4203 0.29 -0.6 4,998,795 + Psyr_4203 0.32 +1.2 4,998,796 - Psyr_4203 0.33 -1.1 4,998,796 - Psyr_4203 0.33 -1.6 4,999,119 + +0.3 4,999,119 + -1.2 4,999,120 - -0.1 4,999,174 + -0.9 4,999,175 - +0.2 4,999,175 - +0.2 4,999,175 - +0.7 4,999,175 - -0.8 4,999,175 - +0.7 4,999,175 - -1.1 4,999,175 - +0.0 4,999,175 - +0.4 4,999,175 - -0.5 4,999,179 - +0.2 4,999,179 - +0.4 4,999,280 + -0.3 4,999,281 - -0.8 4,999,291 - +1.6 4,999,306 + -0.6 4,999,306 + +1.2 4,999,306 + -0.7 4,999,307 - +0.4 4,999,307 - +0.8 4,999,414 + -0.7 4,999,414 + -0.7 4,999,428 + -1.4 4,999,428 + -0.4 4,999,428 + -0.8 4,999,428 + +2.8 4,999,428 + +0.2 4,999,428 + -0.9 4,999,428 + +2.0 4,999,428 + +0.0 4,999,428 + -1.5 4,999,428 + -0.2 4,999,428 + +0.6 4,999,428 + +0.7 4,999,428 + -0.6 4,999,428 + +0.1 4,999,428 + -0.2 4,999,428 + +0.2 4,999,428 + +0.4 4,999,429 - -1.0 4,999,429 - -2.1 4,999,429 - -0.0 4,999,429 - +0.4 4,999,429 - -0.6 4,999,429 - -1.4 4,999,429 - +0.0 4,999,429 - +0.5 4,999,429 - -1.4 4,999,429 - -1.3 4,999,429 - -0.8 4,999,429 - -0.1 4,999,429 - +0.7 4,999,429 - -0.9 4,999,429 - -2.3 4,999,429 - -0.1 4,999,429 - +1.6 4,999,429 - +0.0 4,999,429 - -0.6 4,999,548 + Psyr_4204 0.42 +0.3 4,999,548 + Psyr_4204 0.42 -0.0
Or see this region's nucleotide sequence