Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2940

Experiment: KB with Fumarprotocetraric Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2939 and Psyr_2940 are separated by 18 nucleotidesPsyr_2940 and Psyr_2941 are separated by 496 nucleotides Psyr_2939: Psyr_2939 - response regulator receiver modulated diguanylate cyclase, at 3,526,710 to 3,527,666 _2939 Psyr_2940: Psyr_2940 - PAS, at 3,527,685 to 3,531,746 _2940 Psyr_2941: Psyr_2941 - amino acid ABC transporter substrate-binding protein, PAAT family, at 3,532,243 to 3,533,115 _2941 Position (kb) 3527 3528 3529 3530 3531 3532Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3526.691 kb on + strandat 3526.803 kb on + strandat 3527.316 kb on + strand, within Psyr_2939at 3527.627 kb on + strandat 3527.627 kb on + strandat 3527.628 kb on - strandat 3527.628 kb on - strandat 3527.686 kb on + strandat 3527.687 kb on - strandat 3528.497 kb on - strand, within Psyr_2940at 3528.751 kb on + strand, within Psyr_2940at 3528.752 kb on - strand, within Psyr_2940at 3528.814 kb on - strand, within Psyr_2940at 3528.814 kb on - strand, within Psyr_2940at 3528.814 kb on - strand, within Psyr_2940at 3528.814 kb on - strand, within Psyr_2940at 3528.814 kb on - strand, within Psyr_2940at 3528.942 kb on + strand, within Psyr_2940at 3528.942 kb on + strand, within Psyr_2940at 3528.942 kb on + strand, within Psyr_2940at 3528.942 kb on + strand, within Psyr_2940at 3528.942 kb on + strand, within Psyr_2940at 3528.942 kb on + strand, within Psyr_2940at 3528.942 kb on + strandat 3528.943 kb on - strand, within Psyr_2940at 3528.943 kb on - strand, within Psyr_2940at 3528.943 kb on - strand, within Psyr_2940at 3528.943 kb on - strand, within Psyr_2940at 3528.943 kb on - strand, within Psyr_2940at 3528.943 kb on - strand, within Psyr_2940at 3528.943 kb on - strand, within Psyr_2940at 3528.943 kb on - strand, within Psyr_2940at 3529.044 kb on + strand, within Psyr_2940at 3529.045 kb on - strand, within Psyr_2940at 3529.492 kb on - strand, within Psyr_2940at 3529.610 kb on + strand, within Psyr_2940at 3529.611 kb on - strand, within Psyr_2940at 3529.746 kb on + strand, within Psyr_2940at 3529.747 kb on - strand, within Psyr_2940at 3529.874 kb on + strand, within Psyr_2940at 3529.875 kb on - strand, within Psyr_2940at 3529.997 kb on - strand, within Psyr_2940at 3529.997 kb on - strand, within Psyr_2940at 3530.438 kb on + strand, within Psyr_2940at 3530.862 kb on + strand, within Psyr_2940at 3530.862 kb on + strand, within Psyr_2940at 3530.863 kb on - strand, within Psyr_2940at 3530.863 kb on - strand, within Psyr_2940at 3530.887 kb on + strand, within Psyr_2940at 3530.888 kb on - strand, within Psyr_2940at 3530.908 kb on + strand, within Psyr_2940at 3530.908 kb on + strand, within Psyr_2940at 3530.908 kb on + strand, within Psyr_2940at 3530.908 kb on + strand, within Psyr_2940at 3530.908 kb on + strand, within Psyr_2940at 3530.909 kb on - strand, within Psyr_2940at 3530.909 kb on - strand, within Psyr_2940at 3530.909 kb on - strand, within Psyr_2940at 3530.909 kb on - strand, within Psyr_2940at 3530.909 kb on - strand, within Psyr_2940at 3530.984 kb on - strand, within Psyr_2940at 3531.055 kb on + strand, within Psyr_2940at 3531.055 kb on + strand, within Psyr_2940at 3531.055 kb on + strand, within Psyr_2940at 3531.055 kb on + strand, within Psyr_2940at 3531.055 kb on + strand, within Psyr_2940at 3531.055 kb on + strand, within Psyr_2940at 3531.055 kb on + strand, within Psyr_2940at 3531.056 kb on - strand, within Psyr_2940at 3531.056 kb on - strand, within Psyr_2940at 3531.056 kb on - strand, within Psyr_2940at 3531.135 kb on + strand, within Psyr_2940at 3531.135 kb on + strand, within Psyr_2940at 3531.135 kb on + strand, within Psyr_2940at 3531.136 kb on - strand, within Psyr_2940at 3531.179 kb on + strand, within Psyr_2940at 3531.180 kb on - strand, within Psyr_2940at 3531.252 kb on - strand, within Psyr_2940at 3531.391 kb on - strandat 3531.509 kb on + strandat 3531.510 kb on - strandat 3531.510 kb on - strandat 3531.565 kb on + strandat 3531.565 kb on + strandat 3531.585 kb on + strandat 3531.585 kb on + strandat 3531.585 kb on + strandat 3531.585 kb on + strandat 3531.586 kb on - strandat 3531.586 kb on - strandat 3531.586 kb on - strandat 3531.586 kb on - strandat 3531.631 kb on - strandat 3531.837 kb on + strandat 3531.838 kb on - strandat 3531.956 kb on + strandat 3531.957 kb on - strandat 3531.963 kb on + strandat 3531.963 kb on + strandat 3532.042 kb on - strandat 3532.042 kb on - strandat 3532.042 kb on - strandat 3532.042 kb on - strandat 3532.046 kb on - strandat 3532.074 kb on + strandat 3532.142 kb on + strandat 3532.143 kb on - strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.312 kb on + strandat 3532.313 kb on - strandat 3532.313 kb on - strandat 3532.313 kb on - strandat 3532.313 kb on - strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.316 kb on + strandat 3532.317 kb on - strandat 3532.317 kb on - strandat 3532.317 kb on - strandat 3532.325 kb on + strandat 3532.326 kb on - strandat 3532.340 kb on + strand, within Psyr_2941at 3532.341 kb on - strand, within Psyr_2941at 3532.341 kb on - strand, within Psyr_2941at 3532.512 kb on - strand, within Psyr_2941at 3532.609 kb on - strand, within Psyr_2941

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Fumarprotocetraric Acid 10 mM
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3,526,691 + +0.7
3,526,803 + +0.4
3,527,316 + Psyr_2939 0.63 +0.1
3,527,627 + +0.4
3,527,627 + +3.9
3,527,628 - +0.1
3,527,628 - -1.3
3,527,686 + -0.4
3,527,687 - +1.3
3,528,497 - Psyr_2940 0.20 +1.1
3,528,751 + Psyr_2940 0.26 -0.4
3,528,752 - Psyr_2940 0.26 +0.4
3,528,814 - Psyr_2940 0.28 +0.7
3,528,814 - Psyr_2940 0.28 +0.3
3,528,814 - Psyr_2940 0.28 -0.4
3,528,814 - Psyr_2940 0.28 +2.1
3,528,814 - Psyr_2940 0.28 +0.1
3,528,942 + Psyr_2940 0.31 -0.1
3,528,942 + Psyr_2940 0.31 +0.2
3,528,942 + Psyr_2940 0.31 -0.3
3,528,942 + Psyr_2940 0.31 -1.7
3,528,942 + Psyr_2940 0.31 -0.2
3,528,942 + Psyr_2940 0.31 +1.1
3,528,942 + -0.5
3,528,943 - Psyr_2940 0.31 +2.1
3,528,943 - Psyr_2940 0.31 +1.2
3,528,943 - Psyr_2940 0.31 +0.1
3,528,943 - Psyr_2940 0.31 +0.7
3,528,943 - Psyr_2940 0.31 -1.3
3,528,943 - Psyr_2940 0.31 +0.9
3,528,943 - Psyr_2940 0.31 +0.3
3,528,943 - Psyr_2940 0.31 -0.0
3,529,044 + Psyr_2940 0.33 +0.8
3,529,045 - Psyr_2940 0.33 -1.4
3,529,492 - Psyr_2940 0.44 +1.3
3,529,610 + Psyr_2940 0.47 +1.3
3,529,611 - Psyr_2940 0.47 -0.0
3,529,746 + Psyr_2940 0.51 +0.4
3,529,747 - Psyr_2940 0.51 +0.5
3,529,874 + Psyr_2940 0.54 +0.7
3,529,875 - Psyr_2940 0.54 +0.1
3,529,997 - Psyr_2940 0.57 -1.4
3,529,997 - Psyr_2940 0.57 -0.5
3,530,438 + Psyr_2940 0.68 +0.3
3,530,862 + Psyr_2940 0.78 +0.9
3,530,862 + Psyr_2940 0.78 +0.5
3,530,863 - Psyr_2940 0.78 +0.1
3,530,863 - Psyr_2940 0.78 -0.0
3,530,887 + Psyr_2940 0.79 +0.4
3,530,888 - Psyr_2940 0.79 +1.1
3,530,908 + Psyr_2940 0.79 -0.5
3,530,908 + Psyr_2940 0.79 +0.4
3,530,908 + Psyr_2940 0.79 -1.1
3,530,908 + Psyr_2940 0.79 -0.6
3,530,908 + Psyr_2940 0.79 -0.5
3,530,909 - Psyr_2940 0.79 +3.7
3,530,909 - Psyr_2940 0.79 -0.1
3,530,909 - Psyr_2940 0.79 +0.2
3,530,909 - Psyr_2940 0.79 +1.3
3,530,909 - Psyr_2940 0.79 -0.2
3,530,984 - Psyr_2940 0.81 -0.8
3,531,055 + Psyr_2940 0.83 +1.7
3,531,055 + Psyr_2940 0.83 +1.9
3,531,055 + Psyr_2940 0.83 -0.0
3,531,055 + Psyr_2940 0.83 -0.4
3,531,055 + Psyr_2940 0.83 +1.3
3,531,055 + Psyr_2940 0.83 -0.6
3,531,055 + Psyr_2940 0.83 +0.8
3,531,056 - Psyr_2940 0.83 +0.5
3,531,056 - Psyr_2940 0.83 +0.1
3,531,056 - Psyr_2940 0.83 +0.2
3,531,135 + Psyr_2940 0.85 -1.1
3,531,135 + Psyr_2940 0.85 +1.5
3,531,135 + Psyr_2940 0.85 +1.1
3,531,136 - Psyr_2940 0.85 -0.1
3,531,179 + Psyr_2940 0.86 +0.1
3,531,180 - Psyr_2940 0.86 +0.4
3,531,252 - Psyr_2940 0.88 +1.0
3,531,391 - +1.1
3,531,509 + +0.0
3,531,510 - +0.0
3,531,510 - +0.5
3,531,565 + +0.4
3,531,565 + +0.7
3,531,585 + +0.4
3,531,585 + -0.5
3,531,585 + -0.1
3,531,585 + +0.1
3,531,586 - -1.8
3,531,586 - +0.0
3,531,586 - -0.3
3,531,586 - -1.0
3,531,631 - -0.1
3,531,837 + +0.4
3,531,838 - -1.6
3,531,956 + -0.6
3,531,957 - -2.3
3,531,963 + -0.1
3,531,963 + +1.0
3,532,042 - -0.2
3,532,042 - +0.7
3,532,042 - +1.5
3,532,042 - +0.3
3,532,046 - +0.7
3,532,074 + -1.1
3,532,142 + -0.1
3,532,143 - -0.8
3,532,312 + -1.5
3,532,312 + +2.1
3,532,312 + +0.9
3,532,312 + -0.6
3,532,312 + -0.2
3,532,312 + +0.4
3,532,312 + -1.1
3,532,313 - +0.1
3,532,313 - +0.0
3,532,313 - +1.0
3,532,313 - +0.6
3,532,316 + -0.0
3,532,316 + +0.6
3,532,316 + -0.9
3,532,316 + +1.1
3,532,316 + -0.3
3,532,316 + -0.4
3,532,316 + +0.6
3,532,317 - -0.3
3,532,317 - -0.2
3,532,317 - +0.4
3,532,325 + -1.5
3,532,326 - -1.7
3,532,340 + Psyr_2941 0.11 -0.4
3,532,341 - Psyr_2941 0.11 -0.5
3,532,341 - Psyr_2941 0.11 +0.4
3,532,512 - Psyr_2941 0.31 -0.2
3,532,609 - Psyr_2941 0.42 -0.3

Or see this region's nucleotide sequence