Experiment: KB with Fumarprotocetraric Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2645 and Psyr_2646 are separated by 632 nucleotides Psyr_2646 and Psyr_2647 are separated by 88 nucleotides Psyr_2647 and Psyr_2648 overlap by 16 nucleotides
Psyr_2645: Psyr_2645 - hypothetical protein, at 3,215,082 to 3,215,459
_2645
Psyr_2646: Psyr_2646 - Radical SAM, at 3,216,092 to 3,218,263
_2646
Psyr_2647: Psyr_2647 - hypothetical protein, at 3,218,352 to 3,219,233
_2647
Psyr_2648: Psyr_2648 - hypothetical protein, at 3,219,218 to 3,220,411
_2648
Position (kb)
3216
3217
3218
3219 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3215.095 kb on - strand at 3215.095 kb on - strand at 3215.215 kb on + strand, within Psyr_2645 at 3215.240 kb on - strand, within Psyr_2645 at 3215.240 kb on - strand, within Psyr_2645 at 3215.240 kb on - strand, within Psyr_2645 at 3215.240 kb on - strand, within Psyr_2645 at 3215.240 kb on - strand, within Psyr_2645 at 3215.287 kb on + strand, within Psyr_2645 at 3215.287 kb on + strand, within Psyr_2645 at 3215.288 kb on - strand, within Psyr_2645 at 3215.288 kb on - strand, within Psyr_2645 at 3215.288 kb on - strand, within Psyr_2645 at 3215.288 kb on - strand, within Psyr_2645 at 3215.288 kb on - strand, within Psyr_2645 at 3215.288 kb on - strand, within Psyr_2645 at 3215.399 kb on + strand, within Psyr_2645 at 3215.399 kb on + strand, within Psyr_2645 at 3215.405 kb on + strand, within Psyr_2645 at 3215.405 kb on + strand, within Psyr_2645 at 3215.405 kb on + strand, within Psyr_2645 at 3215.405 kb on + strand, within Psyr_2645 at 3215.406 kb on - strand, within Psyr_2645 at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.646 kb on + strand at 3215.647 kb on - strand at 3215.647 kb on - strand at 3215.647 kb on - strand at 3215.647 kb on - strand at 3215.647 kb on - strand at 3215.732 kb on - strand at 3215.746 kb on - strand at 3215.786 kb on - strand at 3216.027 kb on + strand at 3216.027 kb on + strand at 3216.027 kb on + strand at 3216.028 kb on - strand at 3216.047 kb on + strand at 3216.047 kb on + strand at 3216.047 kb on + strand at 3216.048 kb on - strand at 3216.048 kb on - strand at 3216.055 kb on + strand at 3216.164 kb on + strand at 3216.165 kb on - strand at 3216.165 kb on - strand at 3216.165 kb on - strand at 3216.165 kb on - strand at 3216.165 kb on - strand at 3216.165 kb on - strand at 3216.165 kb on - strand at 3216.165 kb on - strand at 3216.170 kb on + strand at 3216.171 kb on - strand at 3216.171 kb on - strand at 3216.171 kb on - strand at 3216.257 kb on + strand at 3216.257 kb on + strand at 3216.258 kb on - strand at 3216.328 kb on - strand, within Psyr_2646 at 3216.570 kb on - strand, within Psyr_2646 at 3216.638 kb on + strand, within Psyr_2646 at 3216.639 kb on - strand, within Psyr_2646 at 3216.639 kb on - strand, within Psyr_2646 at 3216.734 kb on + strand, within Psyr_2646 at 3216.735 kb on - strand, within Psyr_2646 at 3216.899 kb on - strand, within Psyr_2646 at 3216.899 kb on - strand, within Psyr_2646 at 3216.902 kb on + strand, within Psyr_2646 at 3216.902 kb on + strand, within Psyr_2646 at 3216.903 kb on - strand, within Psyr_2646 at 3216.903 kb on - strand, within Psyr_2646 at 3216.903 kb on - strand, within Psyr_2646 at 3216.903 kb on - strand, within Psyr_2646 at 3217.132 kb on + strand, within Psyr_2646 at 3217.139 kb on + strand, within Psyr_2646 at 3217.139 kb on + strand, within Psyr_2646 at 3217.139 kb on + strand, within Psyr_2646 at 3217.164 kb on + strand, within Psyr_2646 at 3217.165 kb on - strand, within Psyr_2646 at 3217.266 kb on + strand, within Psyr_2646 at 3217.353 kb on + strand, within Psyr_2646 at 3217.353 kb on + strand, within Psyr_2646 at 3217.353 kb on + strand, within Psyr_2646 at 3217.353 kb on + strand, within Psyr_2646 at 3217.353 kb on + strand, within Psyr_2646 at 3217.353 kb on + strand, within Psyr_2646 at 3217.353 kb on + strand, within Psyr_2646 at 3217.353 kb on + strand, within Psyr_2646 at 3217.354 kb on - strand, within Psyr_2646 at 3217.354 kb on - strand, within Psyr_2646 at 3217.354 kb on - strand, within Psyr_2646 at 3217.354 kb on - strand, within Psyr_2646 at 3217.354 kb on - strand at 3217.354 kb on - strand, within Psyr_2646 at 3217.354 kb on - strand, within Psyr_2646 at 3217.354 kb on - strand, within Psyr_2646 at 3217.354 kb on - strand, within Psyr_2646 at 3217.354 kb on - strand, within Psyr_2646 at 3217.414 kb on - strand, within Psyr_2646 at 3217.459 kb on - strand, within Psyr_2646 at 3217.469 kb on - strand, within Psyr_2646 at 3217.524 kb on - strand, within Psyr_2646 at 3217.524 kb on - strand, within Psyr_2646 at 3217.689 kb on + strand, within Psyr_2646 at 3217.820 kb on + strand, within Psyr_2646 at 3217.820 kb on + strand, within Psyr_2646 at 3217.820 kb on + strand, within Psyr_2646 at 3217.820 kb on + strand, within Psyr_2646 at 3217.820 kb on + strand, within Psyr_2646 at 3217.820 kb on + strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.821 kb on - strand, within Psyr_2646 at 3217.859 kb on + strand, within Psyr_2646 at 3217.907 kb on + strand, within Psyr_2646 at 3217.908 kb on - strand, within Psyr_2646 at 3217.908 kb on - strand, within Psyr_2646 at 3217.935 kb on + strand, within Psyr_2646 at 3217.936 kb on - strand, within Psyr_2646 at 3217.945 kb on + strand, within Psyr_2646 at 3217.945 kb on + strand, within Psyr_2646 at 3217.946 kb on - strand, within Psyr_2646 at 3218.295 kb on + strand at 3218.296 kb on - strand at 3218.327 kb on + strand at 3218.327 kb on + strand at 3218.328 kb on - strand at 3218.328 kb on - strand at 3218.328 kb on - strand at 3218.328 kb on - strand at 3218.379 kb on + strand at 3218.457 kb on - strand, within Psyr_2647 at 3218.457 kb on - strand, within Psyr_2647 at 3218.457 kb on - strand, within Psyr_2647 at 3218.492 kb on + strand, within Psyr_2647 at 3218.492 kb on + strand, within Psyr_2647 at 3218.493 kb on - strand, within Psyr_2647 at 3218.549 kb on + strand, within Psyr_2647 at 3218.550 kb on - strand, within Psyr_2647 at 3218.577 kb on - strand, within Psyr_2647 at 3218.577 kb on - strand, within Psyr_2647 at 3218.790 kb on - strand, within Psyr_2647 at 3218.806 kb on + strand, within Psyr_2647 at 3218.806 kb on + strand, within Psyr_2647 at 3218.806 kb on + strand, within Psyr_2647 at 3218.806 kb on + strand, within Psyr_2647 at 3218.825 kb on + strand, within Psyr_2647 at 3218.825 kb on + strand, within Psyr_2647 at 3218.826 kb on - strand, within Psyr_2647 at 3218.826 kb on - strand, within Psyr_2647 at 3218.826 kb on - strand, within Psyr_2647 at 3218.826 kb on - strand, within Psyr_2647 at 3218.909 kb on + strand, within Psyr_2647 at 3218.910 kb on - strand, within Psyr_2647 at 3218.985 kb on + strand at 3218.985 kb on + strand, within Psyr_2647 at 3218.986 kb on - strand, within Psyr_2647 at 3218.986 kb on - strand, within Psyr_2647 at 3218.986 kb on - strand, within Psyr_2647 at 3219.012 kb on - strand, within Psyr_2647 at 3219.041 kb on - strand, within Psyr_2647 at 3219.095 kb on - strand, within Psyr_2647 at 3219.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fumarprotocetraric Acid 10 mM remove 3,215,095 - -1.6 3,215,095 - +2.2 3,215,215 + Psyr_2645 0.35 +1.2 3,215,240 - Psyr_2645 0.42 -0.9 3,215,240 - Psyr_2645 0.42 -1.5 3,215,240 - Psyr_2645 0.42 +0.2 3,215,240 - Psyr_2645 0.42 -0.2 3,215,240 - Psyr_2645 0.42 -0.5 3,215,287 + Psyr_2645 0.54 +0.3 3,215,287 + Psyr_2645 0.54 -1.3 3,215,288 - Psyr_2645 0.54 -0.1 3,215,288 - Psyr_2645 0.54 -0.0 3,215,288 - Psyr_2645 0.54 -0.9 3,215,288 - Psyr_2645 0.54 +0.0 3,215,288 - Psyr_2645 0.54 -0.6 3,215,288 - Psyr_2645 0.54 +2.2 3,215,399 + Psyr_2645 0.84 -1.1 3,215,399 + Psyr_2645 0.84 +0.2 3,215,405 + Psyr_2645 0.85 +0.3 3,215,405 + Psyr_2645 0.85 -1.4 3,215,405 + Psyr_2645 0.85 +0.8 3,215,405 + Psyr_2645 0.85 -1.1 3,215,406 - Psyr_2645 0.86 -0.4 3,215,646 + -0.8 3,215,646 + -0.7 3,215,646 + -0.0 3,215,646 + +0.2 3,215,646 + +2.6 3,215,646 + -3.2 3,215,646 + +0.8 3,215,646 + -1.5 3,215,646 + +0.1 3,215,646 + -0.5 3,215,646 + -0.7 3,215,646 + -1.1 3,215,646 + -2.5 3,215,646 + -0.5 3,215,647 - +0.5 3,215,647 - +1.2 3,215,647 - -1.4 3,215,647 - +1.0 3,215,647 - -0.7 3,215,732 - -0.5 3,215,746 - +0.7 3,215,786 - +0.9 3,216,027 + -0.5 3,216,027 + +1.6 3,216,027 + +0.7 3,216,028 - +0.9 3,216,047 + -0.0 3,216,047 + +1.0 3,216,047 + -0.4 3,216,048 - +0.6 3,216,048 - +0.2 3,216,055 + +0.3 3,216,164 + -0.5 3,216,165 - -0.2 3,216,165 - +0.7 3,216,165 - -0.5 3,216,165 - -0.3 3,216,165 - +1.5 3,216,165 - -0.3 3,216,165 - +0.2 3,216,165 - -0.1 3,216,170 + +0.4 3,216,171 - -0.4 3,216,171 - +1.2 3,216,171 - -0.0 3,216,257 + +0.4 3,216,257 + -0.1 3,216,258 - +0.6 3,216,328 - Psyr_2646 0.11 +0.8 3,216,570 - Psyr_2646 0.22 -0.6 3,216,638 + Psyr_2646 0.25 +0.4 3,216,639 - Psyr_2646 0.25 +1.3 3,216,639 - Psyr_2646 0.25 +0.3 3,216,734 + Psyr_2646 0.30 +2.2 3,216,735 - Psyr_2646 0.30 -0.6 3,216,899 - Psyr_2646 0.37 +1.6 3,216,899 - Psyr_2646 0.37 +3.5 3,216,902 + Psyr_2646 0.37 -0.0 3,216,902 + Psyr_2646 0.37 +1.8 3,216,903 - Psyr_2646 0.37 +0.5 3,216,903 - Psyr_2646 0.37 +0.8 3,216,903 - Psyr_2646 0.37 +1.0 3,216,903 - Psyr_2646 0.37 +1.2 3,217,132 + Psyr_2646 0.48 +0.8 3,217,139 + Psyr_2646 0.48 +0.6 3,217,139 + Psyr_2646 0.48 +1.1 3,217,139 + Psyr_2646 0.48 +0.5 3,217,164 + Psyr_2646 0.49 +0.7 3,217,165 - Psyr_2646 0.49 +0.7 3,217,266 + Psyr_2646 0.54 +0.3 3,217,353 + Psyr_2646 0.58 -1.3 3,217,353 + Psyr_2646 0.58 +0.7 3,217,353 + Psyr_2646 0.58 +0.4 3,217,353 + Psyr_2646 0.58 +1.0 3,217,353 + Psyr_2646 0.58 +0.7 3,217,353 + Psyr_2646 0.58 -2.9 3,217,353 + Psyr_2646 0.58 +0.9 3,217,353 + Psyr_2646 0.58 -0.7 3,217,354 - Psyr_2646 0.58 -2.1 3,217,354 - Psyr_2646 0.58 +1.1 3,217,354 - Psyr_2646 0.58 -1.0 3,217,354 - Psyr_2646 0.58 -1.4 3,217,354 - +0.2 3,217,354 - Psyr_2646 0.58 -0.9 3,217,354 - Psyr_2646 0.58 +0.9 3,217,354 - Psyr_2646 0.58 +1.5 3,217,354 - Psyr_2646 0.58 +1.2 3,217,354 - Psyr_2646 0.58 -0.1 3,217,414 - Psyr_2646 0.61 +0.5 3,217,459 - Psyr_2646 0.63 +0.7 3,217,469 - Psyr_2646 0.63 +0.6 3,217,524 - Psyr_2646 0.66 -0.1 3,217,524 - Psyr_2646 0.66 +0.2 3,217,689 + Psyr_2646 0.74 -0.6 3,217,820 + Psyr_2646 0.80 -0.0 3,217,820 + Psyr_2646 0.80 +1.6 3,217,820 + Psyr_2646 0.80 +0.2 3,217,820 + Psyr_2646 0.80 +0.5 3,217,820 + Psyr_2646 0.80 +0.5 3,217,820 + Psyr_2646 0.80 +0.6 3,217,821 - Psyr_2646 0.80 -0.2 3,217,821 - Psyr_2646 0.80 +1.0 3,217,821 - Psyr_2646 0.80 +0.7 3,217,821 - Psyr_2646 0.80 +1.2 3,217,821 - Psyr_2646 0.80 +0.4 3,217,821 - Psyr_2646 0.80 +2.4 3,217,821 - Psyr_2646 0.80 +0.7 3,217,821 - Psyr_2646 0.80 -1.4 3,217,821 - Psyr_2646 0.80 +0.7 3,217,821 - Psyr_2646 0.80 +0.7 3,217,859 + Psyr_2646 0.81 +0.7 3,217,907 + Psyr_2646 0.84 +1.4 3,217,908 - Psyr_2646 0.84 +2.1 3,217,908 - Psyr_2646 0.84 +0.3 3,217,935 + Psyr_2646 0.85 +1.6 3,217,936 - Psyr_2646 0.85 +0.2 3,217,945 + Psyr_2646 0.85 -0.0 3,217,945 + Psyr_2646 0.85 +1.4 3,217,946 - Psyr_2646 0.85 -1.4 3,218,295 + +1.7 3,218,296 - +0.8 3,218,327 + -0.4 3,218,327 + +1.2 3,218,328 - -0.6 3,218,328 - -0.3 3,218,328 - +0.9 3,218,328 - +0.3 3,218,379 + +1.0 3,218,457 - Psyr_2647 0.12 +0.5 3,218,457 - Psyr_2647 0.12 +0.5 3,218,457 - Psyr_2647 0.12 +0.3 3,218,492 + Psyr_2647 0.16 +1.3 3,218,492 + Psyr_2647 0.16 +1.6 3,218,493 - Psyr_2647 0.16 +1.4 3,218,549 + Psyr_2647 0.22 -1.4 3,218,550 - Psyr_2647 0.22 -2.2 3,218,577 - Psyr_2647 0.26 +2.8 3,218,577 - Psyr_2647 0.26 +0.6 3,218,790 - Psyr_2647 0.50 +0.1 3,218,806 + Psyr_2647 0.51 +1.4 3,218,806 + Psyr_2647 0.51 -1.2 3,218,806 + Psyr_2647 0.51 +0.8 3,218,806 + Psyr_2647 0.51 +0.0 3,218,825 + Psyr_2647 0.54 +0.7 3,218,825 + Psyr_2647 0.54 -0.1 3,218,826 - Psyr_2647 0.54 +3.0 3,218,826 - Psyr_2647 0.54 +1.2 3,218,826 - Psyr_2647 0.54 +0.4 3,218,826 - Psyr_2647 0.54 -0.5 3,218,909 + Psyr_2647 0.63 +0.1 3,218,910 - Psyr_2647 0.63 -0.1 3,218,985 + +3.5 3,218,985 + Psyr_2647 0.72 +0.9 3,218,986 - Psyr_2647 0.72 +0.5 3,218,986 - Psyr_2647 0.72 +0.2 3,218,986 - Psyr_2647 0.72 -0.3 3,219,012 - Psyr_2647 0.75 -0.2 3,219,041 - Psyr_2647 0.78 -0.1 3,219,095 - Psyr_2647 0.84 +1.7 3,219,235 + +1.6
Or see this region's nucleotide sequence