Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11865 and BWI76_RS11870 are separated by 9 nucleotides BWI76_RS11870 and BWI76_RS11875 are separated by 29 nucleotides BWI76_RS11875 and BWI76_RS11880 are separated by 228 nucleotides
BWI76_RS11865: BWI76_RS11865 - phosphatase, at 2,495,850 to 2,496,719
_RS11865
BWI76_RS11870: BWI76_RS11870 - hypothetical protein, at 2,496,729 to 2,497,349
_RS11870
BWI76_RS11875: BWI76_RS11875 - hypothetical protein, at 2,497,379 to 2,499,277
_RS11875
BWI76_RS11880: BWI76_RS11880 - 23S rRNA pseudouridylate synthase B, at 2,499,506 to 2,500,393
_RS11880
Position (kb)
2497
2498
2499
2500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2496.480 kb on - strand, within BWI76_RS11865 at 2496.541 kb on - strand, within BWI76_RS11865 at 2496.588 kb on + strand, within BWI76_RS11865 at 2496.691 kb on + strand at 2496.691 kb on + strand at 2496.699 kb on - strand at 2496.699 kb on - strand at 2496.815 kb on - strand, within BWI76_RS11870 at 2496.927 kb on - strand, within BWI76_RS11870 at 2497.015 kb on + strand, within BWI76_RS11870 at 2497.072 kb on + strand, within BWI76_RS11870 at 2497.083 kb on + strand, within BWI76_RS11870 at 2497.205 kb on + strand, within BWI76_RS11870 at 2497.205 kb on + strand, within BWI76_RS11870 at 2497.423 kb on + strand at 2497.479 kb on + strand at 2497.827 kb on + strand, within BWI76_RS11875 at 2498.121 kb on + strand, within BWI76_RS11875 at 2498.496 kb on - strand, within BWI76_RS11875 at 2498.500 kb on + strand, within BWI76_RS11875 at 2498.530 kb on - strand, within BWI76_RS11875 at 2498.542 kb on + strand, within BWI76_RS11875 at 2498.550 kb on - strand, within BWI76_RS11875 at 2498.989 kb on + strand, within BWI76_RS11875 at 2499.085 kb on - strand, within BWI76_RS11875 at 2499.266 kb on + strand at 2499.491 kb on + strand at 2499.491 kb on + strand at 2499.491 kb on + strand at 2499.499 kb on - strand at 2499.499 kb on - strand at 2500.084 kb on + strand, within BWI76_RS11880 at 2500.130 kb on + strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.242 kb on - strand, within BWI76_RS11880 at 2500.257 kb on + strand, within BWI76_RS11880 at 2500.257 kb on + strand, within BWI76_RS11880 at 2500.265 kb on - strand, within BWI76_RS11880
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 2,496,480 - BWI76_RS11865 0.72 +2.0 2,496,541 - BWI76_RS11865 0.79 -0.5 2,496,588 + BWI76_RS11865 0.85 -0.3 2,496,691 + +1.7 2,496,691 + -0.7 2,496,699 - +0.1 2,496,699 - -1.8 2,496,815 - BWI76_RS11870 0.14 -1.3 2,496,927 - BWI76_RS11870 0.32 +1.0 2,497,015 + BWI76_RS11870 0.46 -0.4 2,497,072 + BWI76_RS11870 0.55 +0.4 2,497,083 + BWI76_RS11870 0.57 -0.4 2,497,205 + BWI76_RS11870 0.77 +0.7 2,497,205 + BWI76_RS11870 0.77 +1.0 2,497,423 + +1.6 2,497,479 + -0.6 2,497,827 + BWI76_RS11875 0.24 -3.6 2,498,121 + BWI76_RS11875 0.39 -1.2 2,498,496 - BWI76_RS11875 0.59 +0.7 2,498,500 + BWI76_RS11875 0.59 -0.8 2,498,530 - BWI76_RS11875 0.61 -1.0 2,498,542 + BWI76_RS11875 0.61 -3.2 2,498,550 - BWI76_RS11875 0.62 +0.3 2,498,989 + BWI76_RS11875 0.85 -0.6 2,499,085 - BWI76_RS11875 0.90 -3.2 2,499,266 + -0.1 2,499,491 + -0.4 2,499,491 + -0.4 2,499,491 + +0.0 2,499,499 - +0.2 2,499,499 - -0.7 2,500,084 + BWI76_RS11880 0.65 -0.0 2,500,130 + BWI76_RS11880 0.70 -0.5 2,500,242 - BWI76_RS11880 0.83 -1.3 2,500,242 - BWI76_RS11880 0.83 +0.4 2,500,242 - BWI76_RS11880 0.83 +0.9 2,500,242 - BWI76_RS11880 0.83 -1.4 2,500,242 - BWI76_RS11880 0.83 +0.7 2,500,257 + BWI76_RS11880 0.85 +1.0 2,500,257 + BWI76_RS11880 0.85 +0.0 2,500,265 - BWI76_RS11880 0.85 -0.2
Or see this region's nucleotide sequence