Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07840

Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS07835 and BWI76_RS07840 are separated by 107 nucleotidesBWI76_RS07840 and BWI76_RS07845 are separated by 121 nucleotides BWI76_RS07835: BWI76_RS07835 - MFS transporter, at 1,661,615 to 1,662,976 _RS07835 BWI76_RS07840: BWI76_RS07840 - inositol monophosphatase family protein, at 1,663,084 to 1,663,893 _RS07840 BWI76_RS07845: BWI76_RS07845 - LacI family transcriptional regulator, at 1,664,015 to 1,665,004 _RS07845 Position (kb) 1663 1664Strain fitness (log2 ratio) -1 0 1at 1662.147 kb on + strand, within BWI76_RS07835at 1662.681 kb on - strand, within BWI76_RS07835at 1662.873 kb on + strandat 1663.016 kb on - strandat 1663.062 kb on + strandat 1663.379 kb on + strand, within BWI76_RS07840at 1663.392 kb on + strand, within BWI76_RS07840at 1663.521 kb on - strand, within BWI76_RS07840at 1663.652 kb on + strand, within BWI76_RS07840at 1664.429 kb on - strand, within BWI76_RS07845at 1664.872 kb on - strand, within BWI76_RS07845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
remove
1,662,147 + BWI76_RS07835 0.39 -0.0
1,662,681 - BWI76_RS07835 0.78 -1.0
1,662,873 + +0.2
1,663,016 - -0.6
1,663,062 + +0.4
1,663,379 + BWI76_RS07840 0.36 +0.9
1,663,392 + BWI76_RS07840 0.38 -0.2
1,663,521 - BWI76_RS07840 0.54 -1.6
1,663,652 + BWI76_RS07840 0.70 -0.8
1,664,429 - BWI76_RS07845 0.42 +0.4
1,664,872 - BWI76_RS07845 0.87 +1.4

Or see this region's nucleotide sequence