Experiment: Ferric citrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0835 and SO0837 are separated by 363 nucleotides SO0837 and SO0839 are separated by 228 nucleotides
SO0835: SO0835 - conserved hypothetical protein (NCBI ptt file), at 852,994 to 854,151
SO0835
SO0837: SO0837 - beta-lactamase, putative (NCBI ptt file), at 854,515 to 855,312
SO0837
SO0839: SO0839 - transcriptional regulator, LysR family (NCBI ptt file), at 855,541 to 856,452
SO0839
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 853.515 kb on + strand, within SO0835 at 853.528 kb on - strand, within SO0835 at 853.692 kb on + strand, within SO0835 at 853.840 kb on + strand, within SO0835 at 853.840 kb on + strand, within SO0835 at 853.848 kb on - strand, within SO0835 at 853.872 kb on - strand, within SO0835 at 853.924 kb on + strand, within SO0835 at 853.931 kb on - strand, within SO0835 at 853.931 kb on - strand, within SO0835 at 853.932 kb on - strand, within SO0835 at 853.932 kb on - strand, within SO0835 at 853.990 kb on + strand, within SO0835 at 854.075 kb on - strand at 854.085 kb on - strand at 854.091 kb on - strand at 854.133 kb on - strand at 854.133 kb on - strand at 854.203 kb on - strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.215 kb on + strand at 854.222 kb on - strand at 854.223 kb on - strand at 854.223 kb on - strand at 854.259 kb on + strand at 854.259 kb on + strand at 854.267 kb on - strand at 854.267 kb on - strand at 854.267 kb on - strand at 854.267 kb on - strand at 854.271 kb on + strand at 854.271 kb on + strand at 854.279 kb on - strand at 854.279 kb on - strand at 854.431 kb on + strand at 854.448 kb on + strand at 854.521 kb on + strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.529 kb on - strand at 854.637 kb on + strand, within SO0837 at 854.639 kb on + strand, within SO0837 at 854.639 kb on + strand, within SO0837 at 854.645 kb on - strand, within SO0837 at 854.645 kb on - strand, within SO0837 at 855.108 kb on + strand, within SO0837 at 855.116 kb on - strand, within SO0837 at 855.163 kb on - strand, within SO0837 at 855.200 kb on + strand, within SO0837 at 855.208 kb on + strand, within SO0837 at 855.283 kb on - strand at 855.347 kb on - strand at 855.356 kb on + strand at 855.388 kb on - strand at 855.564 kb on + strand at 855.583 kb on - strand at 856.281 kb on + strand, within SO0839
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor remove 853,515 + SO0835 0.45 -0.5 853,528 - SO0835 0.46 +1.3 853,692 + SO0835 0.60 +0.8 853,840 + SO0835 0.73 -0.4 853,840 + SO0835 0.73 +4.4 853,848 - SO0835 0.74 -0.2 853,872 - SO0835 0.76 +0.3 853,924 + SO0835 0.80 -0.2 853,931 - SO0835 0.81 -0.0 853,931 - SO0835 0.81 -0.5 853,932 - SO0835 0.81 +1.4 853,932 - SO0835 0.81 -0.0 853,990 + SO0835 0.86 +0.1 854,075 - -0.7 854,085 - +0.3 854,091 - -0.1 854,133 - -1.3 854,133 - -0.6 854,203 - +0.1 854,215 + -0.9 854,215 + +0.2 854,215 + -0.7 854,215 + +0.1 854,215 + -0.1 854,215 + +0.2 854,222 - -0.9 854,223 - +0.1 854,223 - -0.1 854,259 + +0.6 854,259 + -0.7 854,267 - +0.1 854,267 - +0.9 854,267 - -0.3 854,267 - -0.1 854,271 + +0.5 854,271 + -0.2 854,279 - -0.1 854,279 - -0.9 854,431 + +0.6 854,448 + -0.3 854,521 + +0.3 854,529 - -0.1 854,529 - +0.9 854,529 - -0.4 854,529 - -2.5 854,529 - +0.0 854,529 - +0.3 854,637 + SO0837 0.15 -0.2 854,639 + SO0837 0.16 -0.7 854,639 + SO0837 0.16 -0.5 854,645 - SO0837 0.16 -0.1 854,645 - SO0837 0.16 -1.1 855,108 + SO0837 0.74 -1.5 855,116 - SO0837 0.75 -1.1 855,163 - SO0837 0.81 -0.4 855,200 + SO0837 0.86 -1.3 855,208 + SO0837 0.87 -2.1 855,283 - -0.6 855,347 - -0.0 855,356 + +0.0 855,388 - -1.5 855,564 + -0.5 855,583 - +0.4 856,281 + SO0839 0.81 -0.1
Or see this region's nucleotide sequence