Experiment: Ferric citrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0682 and SO0683 are separated by 11 nucleotides SO0683 and SO0684 overlap by 28 nucleotides SO0684 and SO0685 are separated by 59 nucleotides
SO0682: SO0682 - hypothetical protein (NCBI ptt file), at 700,922 to 703,417
SO0682
SO0683: SO0683 - hypothetical protein (NCBI ptt file), at 703,429 to 703,908
SO0683
SO0684: SO0684 - ISSod1, transposase OrfB (NCBI ptt file), at 703,881 to 704,690
SO0684
SO0685: SO0685 - ISSod1, transposase OrfA (NCBI ptt file), at 704,750 to 705,040
SO0685
Position (kb) 703
704 Strain fitness (log2 ratio) -2
-1
0
1
2 at 702.526 kb on - strand, within SO0682 at 702.585 kb on + strand, within SO0682 at 702.593 kb on - strand, within SO0682 at 702.593 kb on - strand, within SO0682 at 702.640 kb on + strand, within SO0682 at 702.696 kb on - strand, within SO0682 at 702.698 kb on + strand, within SO0682 at 702.698 kb on + strand, within SO0682 at 702.698 kb on + strand, within SO0682 at 702.706 kb on - strand, within SO0682 at 702.706 kb on - strand, within SO0682 at 702.706 kb on - strand, within SO0682 at 702.706 kb on - strand, within SO0682 at 702.706 kb on - strand, within SO0682 at 702.732 kb on + strand, within SO0682 at 702.732 kb on + strand, within SO0682 at 702.758 kb on + strand, within SO0682 at 702.790 kb on + strand, within SO0682 at 702.853 kb on - strand, within SO0682 at 702.923 kb on + strand, within SO0682 at 702.931 kb on - strand, within SO0682 at 703.066 kb on + strand, within SO0682 at 703.086 kb on - strand, within SO0682 at 703.186 kb on - strand at 703.278 kb on - strand at 703.295 kb on + strand at 703.298 kb on - strand at 703.347 kb on + strand at 703.386 kb on - strand at 703.399 kb on - strand at 703.410 kb on + strand at 703.432 kb on - strand at 703.432 kb on - strand at 703.457 kb on + strand at 703.487 kb on - strand, within SO0683 at 703.490 kb on - strand, within SO0683 at 703.496 kb on + strand, within SO0683 at 703.664 kb on - strand, within SO0683 at 703.681 kb on + strand, within SO0683 at 703.748 kb on - strand, within SO0683 at 703.755 kb on - strand, within SO0683 at 703.825 kb on - strand, within SO0683 at 703.872 kb on - strand at 703.877 kb on - strand at 703.877 kb on - strand at 703.877 kb on - strand at 703.877 kb on - strand at 703.877 kb on - strand at 703.882 kb on - strand at 703.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ferric citrate electron acceptor remove 702,526 - SO0682 0.64 -0.8 702,585 + SO0682 0.67 +0.9 702,593 - SO0682 0.67 -2.1 702,593 - SO0682 0.67 +0.3 702,640 + SO0682 0.69 +2.1 702,696 - SO0682 0.71 -0.0 702,698 + SO0682 0.71 -0.4 702,698 + SO0682 0.71 +0.3 702,698 + SO0682 0.71 +0.3 702,706 - SO0682 0.71 +0.1 702,706 - SO0682 0.71 +0.3 702,706 - SO0682 0.71 +0.1 702,706 - SO0682 0.71 +0.2 702,706 - SO0682 0.71 +0.5 702,732 + SO0682 0.73 +0.0 702,732 + SO0682 0.73 +0.1 702,758 + SO0682 0.74 -1.2 702,790 + SO0682 0.75 -1.3 702,853 - SO0682 0.77 -0.1 702,923 + SO0682 0.80 -2.1 702,931 - SO0682 0.80 +0.6 703,066 + SO0682 0.86 -2.4 703,086 - SO0682 0.87 +0.5 703,186 - +1.2 703,278 - +0.1 703,295 + -0.1 703,298 - +0.6 703,347 + -1.1 703,386 - -0.1 703,399 - -0.6 703,410 + -1.3 703,432 - -0.4 703,432 - -0.1 703,457 + -0.7 703,487 - SO0683 0.12 -0.7 703,490 - SO0683 0.13 +0.2 703,496 + SO0683 0.14 -0.8 703,664 - SO0683 0.49 -0.8 703,681 + SO0683 0.53 -1.0 703,748 - SO0683 0.66 -1.4 703,755 - SO0683 0.68 +0.3 703,825 - SO0683 0.82 -0.5 703,872 - -0.6 703,877 - +1.5 703,877 - -1.1 703,877 - +1.1 703,877 - +0.1 703,877 - -0.2 703,882 - +0.2 703,892 - -0.2
Or see this region's nucleotide sequence