Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20450 and RS_RS20455 are separated by 100 nucleotides RS_RS20455 and RS_RS20460 are separated by 13 nucleotides
RS_RS20450: RS_RS20450 - Tryptophan 2,3-dioxygenase 2, at 881,643 to 882,752
_RS20450
RS_RS20455: RS_RS20455 - hypothetical protein, at 882,853 to 884,346
_RS20455
RS_RS20460: RS_RS20460 - aminotransferase class V-fold PLP-dependent enzyme, at 884,360 to 885,619
_RS20460
Position (kb) 882
883
884
885 Strain fitness (log2 ratio) -2
-1
0
1
2 at 882.171 kb on + strand, within RS_RS20450 at 882.171 kb on + strand, within RS_RS20450 at 882.172 kb on - strand, within RS_RS20450 at 882.243 kb on + strand, within RS_RS20450 at 882.616 kb on - strand, within RS_RS20450 at 882.616 kb on - strand, within RS_RS20450 at 883.047 kb on + strand, within RS_RS20455 at 883.047 kb on + strand, within RS_RS20455 at 883.047 kb on + strand, within RS_RS20455 at 883.048 kb on - strand, within RS_RS20455 at 883.048 kb on - strand, within RS_RS20455 at 883.048 kb on - strand, within RS_RS20455 at 883.048 kb on - strand, within RS_RS20455 at 883.048 kb on - strand, within RS_RS20455 at 883.048 kb on - strand, within RS_RS20455 at 883.048 kb on - strand, within RS_RS20455 at 883.048 kb on - strand, within RS_RS20455 at 883.477 kb on + strand, within RS_RS20455 at 883.594 kb on + strand, within RS_RS20455 at 883.595 kb on - strand, within RS_RS20455 at 883.595 kb on - strand, within RS_RS20455 at 883.852 kb on + strand, within RS_RS20455 at 884.705 kb on + strand, within RS_RS20460 at 884.706 kb on - strand, within RS_RS20460 at 884.706 kb on - strand, within RS_RS20460 at 885.003 kb on - strand, within RS_RS20460 at 885.006 kb on - strand, within RS_RS20460 at 885.114 kb on - strand, within RS_RS20460
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 882,171 + RS_RS20450 0.48 -1.2 882,171 + RS_RS20450 0.48 -0.2 882,172 - RS_RS20450 0.48 +0.7 882,243 + RS_RS20450 0.54 +0.3 882,616 - RS_RS20450 0.88 +0.2 882,616 - RS_RS20450 0.88 -1.1 883,047 + RS_RS20455 0.13 +0.6 883,047 + RS_RS20455 0.13 -0.8 883,047 + RS_RS20455 0.13 +1.8 883,048 - RS_RS20455 0.13 -0.9 883,048 - RS_RS20455 0.13 -1.0 883,048 - RS_RS20455 0.13 -0.2 883,048 - RS_RS20455 0.13 +1.1 883,048 - RS_RS20455 0.13 -0.1 883,048 - RS_RS20455 0.13 -1.6 883,048 - RS_RS20455 0.13 -0.3 883,048 - RS_RS20455 0.13 -1.1 883,477 + RS_RS20455 0.42 +0.8 883,594 + RS_RS20455 0.50 -1.6 883,595 - RS_RS20455 0.50 +1.0 883,595 - RS_RS20455 0.50 -0.1 883,852 + RS_RS20455 0.67 -2.0 884,705 + RS_RS20460 0.27 -0.9 884,706 - RS_RS20460 0.27 -2.7 884,706 - RS_RS20460 0.27 -1.2 885,003 - RS_RS20460 0.51 +0.6 885,006 - RS_RS20460 0.51 -2.0 885,114 - RS_RS20460 0.60 -2.0
Or see this region's nucleotide sequence