Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20430 and RS_RS20435 are separated by 46 nucleotides RS_RS20435 and RS_RS20440 are separated by 240 nucleotides
RS_RS20430: RS_RS20430 - fumarylacetoacetase, at 876,710 to 877,981
_RS20430
RS_RS20435: RS_RS20435 - homogentisate 1,2-dioxygenase, at 878,028 to 879,374
_RS20435
RS_RS20440: RS_RS20440 - LysR family transcriptional regulator, at 879,615 to 880,544
_RS20440
Position (kb) 878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 877.111 kb on - strand, within RS_RS20430 at 877.111 kb on - strand, within RS_RS20430 at 877.236 kb on + strand, within RS_RS20430 at 877.236 kb on + strand, within RS_RS20430 at 877.236 kb on + strand, within RS_RS20430 at 877.237 kb on - strand, within RS_RS20430 at 877.237 kb on - strand, within RS_RS20430 at 877.237 kb on - strand, within RS_RS20430 at 877.492 kb on - strand, within RS_RS20430 at 877.584 kb on + strand, within RS_RS20430 at 877.584 kb on + strand, within RS_RS20430 at 877.585 kb on - strand, within RS_RS20430 at 877.762 kb on + strand, within RS_RS20430 at 877.762 kb on + strand, within RS_RS20430 at 877.763 kb on - strand, within RS_RS20430 at 877.763 kb on - strand, within RS_RS20430 at 878.080 kb on + strand at 878.296 kb on + strand, within RS_RS20435 at 878.296 kb on + strand, within RS_RS20435 at 878.296 kb on + strand, within RS_RS20435 at 878.296 kb on + strand, within RS_RS20435 at 878.476 kb on + strand, within RS_RS20435 at 878.476 kb on + strand, within RS_RS20435 at 878.476 kb on + strand, within RS_RS20435 at 878.477 kb on - strand, within RS_RS20435 at 878.477 kb on - strand, within RS_RS20435 at 878.515 kb on + strand, within RS_RS20435 at 878.521 kb on + strand, within RS_RS20435 at 878.522 kb on - strand, within RS_RS20435 at 878.522 kb on - strand, within RS_RS20435 at 878.530 kb on + strand, within RS_RS20435 at 878.530 kb on + strand, within RS_RS20435 at 878.530 kb on + strand, within RS_RS20435 at 878.639 kb on - strand, within RS_RS20435 at 878.744 kb on - strand, within RS_RS20435 at 878.899 kb on + strand, within RS_RS20435 at 878.899 kb on + strand, within RS_RS20435 at 878.899 kb on + strand, within RS_RS20435 at 878.900 kb on - strand, within RS_RS20435 at 878.935 kb on + strand, within RS_RS20435 at 878.936 kb on - strand, within RS_RS20435 at 878.938 kb on - strand, within RS_RS20435 at 879.148 kb on + strand, within RS_RS20435 at 879.214 kb on + strand, within RS_RS20435 at 879.215 kb on - strand, within RS_RS20435 at 879.310 kb on + strand at 879.310 kb on + strand at 879.536 kb on + strand at 879.536 kb on + strand at 879.594 kb on - strand at 879.945 kb on + strand, within RS_RS20440 at 879.945 kb on + strand, within RS_RS20440 at 879.945 kb on + strand, within RS_RS20440 at 879.945 kb on + strand, within RS_RS20440 at 879.945 kb on + strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 879.946 kb on - strand, within RS_RS20440 at 880.131 kb on + strand, within RS_RS20440 at 880.132 kb on - strand, within RS_RS20440 at 880.332 kb on + strand, within RS_RS20440 at 880.333 kb on - strand, within RS_RS20440
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 877,111 - RS_RS20430 0.32 -1.2 877,111 - RS_RS20430 0.32 -2.4 877,236 + RS_RS20430 0.41 +1.6 877,236 + RS_RS20430 0.41 -1.6 877,236 + RS_RS20430 0.41 -1.4 877,237 - RS_RS20430 0.41 +0.7 877,237 - RS_RS20430 0.41 -1.0 877,237 - RS_RS20430 0.41 -0.4 877,492 - RS_RS20430 0.61 +0.4 877,584 + RS_RS20430 0.69 -1.9 877,584 + RS_RS20430 0.69 +0.7 877,585 - RS_RS20430 0.69 +3.8 877,762 + RS_RS20430 0.83 -0.7 877,762 + RS_RS20430 0.83 -0.0 877,763 - RS_RS20430 0.83 +1.5 877,763 - RS_RS20430 0.83 +2.5 878,080 + +4.9 878,296 + RS_RS20435 0.20 -1.2 878,296 + RS_RS20435 0.20 +1.4 878,296 + RS_RS20435 0.20 +0.6 878,296 + RS_RS20435 0.20 +0.8 878,476 + RS_RS20435 0.33 +0.0 878,476 + RS_RS20435 0.33 -2.9 878,476 + RS_RS20435 0.33 +3.2 878,477 - RS_RS20435 0.33 +0.2 878,477 - RS_RS20435 0.33 -1.4 878,515 + RS_RS20435 0.36 -0.4 878,521 + RS_RS20435 0.37 -1.2 878,522 - RS_RS20435 0.37 -0.2 878,522 - RS_RS20435 0.37 -0.8 878,530 + RS_RS20435 0.37 -0.2 878,530 + RS_RS20435 0.37 -0.5 878,530 + RS_RS20435 0.37 +1.8 878,639 - RS_RS20435 0.45 -0.8 878,744 - RS_RS20435 0.53 -0.5 878,899 + RS_RS20435 0.65 -2.9 878,899 + RS_RS20435 0.65 +0.2 878,899 + RS_RS20435 0.65 -2.2 878,900 - RS_RS20435 0.65 +0.1 878,935 + RS_RS20435 0.67 +0.0 878,936 - RS_RS20435 0.67 -0.1 878,938 - RS_RS20435 0.68 +0.6 879,148 + RS_RS20435 0.83 +0.4 879,214 + RS_RS20435 0.88 -0.1 879,215 - RS_RS20435 0.88 +0.1 879,310 + +1.1 879,310 + -1.0 879,536 + +0.3 879,536 + -2.6 879,594 - +1.7 879,945 + RS_RS20440 0.35 +2.4 879,945 + RS_RS20440 0.35 +1.5 879,945 + RS_RS20440 0.35 +0.7 879,945 + RS_RS20440 0.35 -1.1 879,945 + RS_RS20440 0.35 -0.4 879,946 - RS_RS20440 0.36 +2.5 879,946 - RS_RS20440 0.36 +0.9 879,946 - RS_RS20440 0.36 -2.0 879,946 - RS_RS20440 0.36 -0.8 879,946 - RS_RS20440 0.36 -0.5 879,946 - RS_RS20440 0.36 +0.2 880,131 + RS_RS20440 0.55 -0.8 880,132 - RS_RS20440 0.56 -0.7 880,332 + RS_RS20440 0.77 -0.5 880,333 - RS_RS20440 0.77 +0.6
Or see this region's nucleotide sequence