Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19980 and RS_RS19985 are separated by 115 nucleotides RS_RS19985 and RS_RS19990 are separated by 82 nucleotides RS_RS19990 and RS_RS19995 are separated by 356 nucleotides
RS_RS19980: RS_RS19980 - TetR/AcrR family transcriptional regulator, at 732,068 to 732,712
_RS19980
RS_RS19985: RS_RS19985 - DUF4440 domain-containing protein, at 732,828 to 733,259
_RS19985
RS_RS19990: RS_RS19990 - VOC family protein, at 733,342 to 733,773
_RS19990
RS_RS19995: RS_RS19995 - hypothetical protein, at 734,130 to 734,519
_RS19995
Position (kb) 733
734 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 732.387 kb on + strand, within RS_RS19980 at 732.388 kb on - strand, within RS_RS19980 at 732.594 kb on - strand, within RS_RS19980 at 732.594 kb on - strand, within RS_RS19980 at 732.594 kb on - strand, within RS_RS19980 at 732.672 kb on + strand at 732.673 kb on - strand at 732.673 kb on - strand at 732.748 kb on + strand at 732.781 kb on + strand at 732.781 kb on + strand at 732.782 kb on - strand at 732.782 kb on - strand at 732.782 kb on - strand at 732.782 kb on - strand at 732.782 kb on - strand at 732.936 kb on + strand, within RS_RS19985 at 732.936 kb on + strand, within RS_RS19985 at 732.937 kb on - strand, within RS_RS19985 at 733.000 kb on - strand, within RS_RS19985 at 733.095 kb on + strand, within RS_RS19985 at 733.095 kb on + strand, within RS_RS19985 at 733.096 kb on - strand, within RS_RS19985 at 733.096 kb on - strand, within RS_RS19985 at 733.096 kb on - strand, within RS_RS19985 at 733.346 kb on + strand at 733.346 kb on + strand at 733.346 kb on + strand at 733.346 kb on + strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.357 kb on + strand at 733.357 kb on + strand at 733.357 kb on + strand at 733.399 kb on + strand, within RS_RS19990 at 733.400 kb on - strand, within RS_RS19990 at 733.441 kb on + strand, within RS_RS19990 at 733.441 kb on + strand, within RS_RS19990 at 733.542 kb on + strand, within RS_RS19990 at 733.825 kb on + strand at 733.825 kb on + strand at 733.825 kb on + strand at 733.825 kb on + strand at 733.825 kb on + strand at 733.826 kb on - strand at 733.826 kb on - strand at 733.826 kb on - strand at 733.826 kb on - strand at 733.826 kb on - strand at 733.881 kb on + strand at 733.949 kb on - strand at 734.004 kb on + strand at 734.004 kb on + strand at 734.004 kb on + strand at 734.004 kb on + strand at 734.005 kb on - strand at 734.005 kb on - strand at 734.005 kb on - strand at 734.005 kb on - strand at 734.007 kb on + strand at 734.007 kb on + strand at 734.007 kb on + strand at 734.007 kb on + strand at 734.007 kb on + strand at 734.007 kb on + strand at 734.007 kb on + strand at 734.007 kb on + strand at 734.007 kb on + strand at 734.008 kb on - strand at 734.008 kb on - strand at 734.008 kb on - strand at 734.008 kb on - strand at 734.008 kb on - strand at 734.008 kb on - strand at 734.008 kb on - strand at 734.008 kb on - strand at 734.008 kb on - strand at 734.024 kb on + strand at 734.131 kb on + strand at 734.132 kb on - strand at 734.132 kb on - strand at 734.132 kb on - strand at 734.132 kb on - strand at 734.254 kb on + strand, within RS_RS19995 at 734.254 kb on + strand, within RS_RS19995 at 734.283 kb on + strand, within RS_RS19995 at 734.283 kb on + strand, within RS_RS19995 at 734.284 kb on - strand, within RS_RS19995 at 734.290 kb on + strand, within RS_RS19995 at 734.291 kb on - strand, within RS_RS19995 at 734.392 kb on + strand, within RS_RS19995 at 734.398 kb on + strand, within RS_RS19995 at 734.398 kb on + strand, within RS_RS19995 at 734.398 kb on + strand, within RS_RS19995 at 734.398 kb on + strand, within RS_RS19995 at 734.399 kb on - strand, within RS_RS19995 at 734.399 kb on - strand, within RS_RS19995 at 734.435 kb on - strand, within RS_RS19995 at 734.520 kb on - strand at 734.520 kb on - strand at 734.520 kb on - strand at 734.578 kb on + strand at 734.639 kb on - strand at 734.639 kb on - strand at 734.709 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 732,387 + RS_RS19980 0.49 -0.5 732,388 - RS_RS19980 0.50 +1.2 732,594 - RS_RS19980 0.82 -0.6 732,594 - RS_RS19980 0.82 -0.3 732,594 - RS_RS19980 0.82 +1.0 732,672 + -0.7 732,673 - +1.3 732,673 - +1.0 732,748 + -1.1 732,781 + -0.1 732,781 + +1.3 732,782 - -0.5 732,782 - +0.2 732,782 - -0.2 732,782 - -1.3 732,782 - +0.3 732,936 + RS_RS19985 0.25 +3.8 732,936 + RS_RS19985 0.25 +1.2 732,937 - RS_RS19985 0.25 +2.4 733,000 - RS_RS19985 0.40 -2.3 733,095 + RS_RS19985 0.62 +0.1 733,095 + RS_RS19985 0.62 -1.0 733,096 - RS_RS19985 0.62 +0.4 733,096 - RS_RS19985 0.62 +0.1 733,096 - RS_RS19985 0.62 -1.3 733,346 + +0.2 733,346 + +0.9 733,346 + +0.9 733,346 + -0.2 733,347 - +0.5 733,347 - +0.7 733,347 - -1.3 733,347 - +0.7 733,347 - -1.3 733,347 - +0.9 733,357 + +0.7 733,357 + +0.1 733,357 + +0.7 733,399 + RS_RS19990 0.13 -1.2 733,400 - RS_RS19990 0.13 +0.5 733,441 + RS_RS19990 0.23 -1.5 733,441 + RS_RS19990 0.23 -2.6 733,542 + RS_RS19990 0.46 +1.3 733,825 + +1.1 733,825 + +0.3 733,825 + +0.0 733,825 + +0.9 733,825 + -0.4 733,826 - -1.7 733,826 - -1.6 733,826 - -0.1 733,826 - -0.9 733,826 - -1.9 733,881 + -0.9 733,949 - -1.0 734,004 + +0.5 734,004 + -0.8 734,004 + -1.3 734,004 + -0.8 734,005 - +0.4 734,005 - -0.2 734,005 - +1.1 734,005 - -1.3 734,007 + -0.0 734,007 + -0.6 734,007 + +0.5 734,007 + -0.1 734,007 + +0.2 734,007 + -0.7 734,007 + +0.8 734,007 + -1.7 734,007 + -0.2 734,008 - +0.8 734,008 - +0.3 734,008 - -0.5 734,008 - +1.8 734,008 - +0.7 734,008 - +0.8 734,008 - -0.7 734,008 - -1.2 734,008 - -0.6 734,024 + +0.8 734,131 + +3.8 734,132 - +0.4 734,132 - -0.6 734,132 - +0.5 734,132 - +0.4 734,254 + RS_RS19995 0.32 +0.5 734,254 + RS_RS19995 0.32 -0.9 734,283 + RS_RS19995 0.39 +2.1 734,283 + RS_RS19995 0.39 +1.6 734,284 - RS_RS19995 0.39 +0.3 734,290 + RS_RS19995 0.41 +0.9 734,291 - RS_RS19995 0.41 +1.8 734,392 + RS_RS19995 0.67 -0.2 734,398 + RS_RS19995 0.69 -1.2 734,398 + RS_RS19995 0.69 +1.2 734,398 + RS_RS19995 0.69 -0.4 734,398 + RS_RS19995 0.69 +1.4 734,399 - RS_RS19995 0.69 +0.5 734,399 - RS_RS19995 0.69 +1.0 734,435 - RS_RS19995 0.78 -0.5 734,520 - -0.2 734,520 - -0.4 734,520 - +1.3 734,578 + -0.2 734,639 - +2.9 734,639 - +0.7 734,709 - -2.3
Or see this region's nucleotide sequence