Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19975 and RS_RS19980 are separated by 172 nucleotides RS_RS19980 and RS_RS19985 are separated by 115 nucleotides RS_RS19985 and RS_RS19990 are separated by 82 nucleotides
RS_RS19975: RS_RS19975 - chemotaxis protein CheV, at 730,954 to 731,895
_RS19975
RS_RS19980: RS_RS19980 - TetR/AcrR family transcriptional regulator, at 732,068 to 732,712
_RS19980
RS_RS19985: RS_RS19985 - DUF4440 domain-containing protein, at 732,828 to 733,259
_RS19985
RS_RS19990: RS_RS19990 - VOC family protein, at 733,342 to 733,773
_RS19990
Position (kb) 732
733 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 731.242 kb on + strand, within RS_RS19975 at 731.243 kb on - strand, within RS_RS19975 at 731.243 kb on - strand, within RS_RS19975 at 731.836 kb on + strand at 731.901 kb on - strand at 732.001 kb on + strand at 732.046 kb on - strand at 732.046 kb on - strand at 732.069 kb on + strand at 732.069 kb on + strand at 732.070 kb on - strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.072 kb on - strand at 732.195 kb on + strand, within RS_RS19980 at 732.387 kb on + strand, within RS_RS19980 at 732.388 kb on - strand, within RS_RS19980 at 732.594 kb on - strand, within RS_RS19980 at 732.594 kb on - strand, within RS_RS19980 at 732.594 kb on - strand, within RS_RS19980 at 732.672 kb on + strand at 732.673 kb on - strand at 732.673 kb on - strand at 732.748 kb on + strand at 732.781 kb on + strand at 732.781 kb on + strand at 732.782 kb on - strand at 732.782 kb on - strand at 732.782 kb on - strand at 732.782 kb on - strand at 732.782 kb on - strand at 732.936 kb on + strand, within RS_RS19985 at 732.936 kb on + strand, within RS_RS19985 at 732.937 kb on - strand, within RS_RS19985 at 733.000 kb on - strand, within RS_RS19985 at 733.095 kb on + strand, within RS_RS19985 at 733.095 kb on + strand, within RS_RS19985 at 733.096 kb on - strand, within RS_RS19985 at 733.096 kb on - strand, within RS_RS19985 at 733.096 kb on - strand, within RS_RS19985 at 733.346 kb on + strand at 733.346 kb on + strand at 733.346 kb on + strand at 733.346 kb on + strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.347 kb on - strand at 733.357 kb on + strand at 733.357 kb on + strand at 733.357 kb on + strand at 733.399 kb on + strand, within RS_RS19990 at 733.400 kb on - strand, within RS_RS19990 at 733.441 kb on + strand, within RS_RS19990 at 733.441 kb on + strand, within RS_RS19990 at 733.542 kb on + strand, within RS_RS19990
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 731,242 + RS_RS19975 0.31 +0.3 731,243 - RS_RS19975 0.31 -0.8 731,243 - RS_RS19975 0.31 -0.7 731,836 + -0.2 731,901 - +0.7 732,001 + +2.6 732,046 - +0.6 732,046 - -0.2 732,069 + -0.8 732,069 + -2.0 732,070 - -0.0 732,071 + -0.2 732,071 + -0.7 732,072 - +0.5 732,195 + RS_RS19980 0.20 +2.4 732,387 + RS_RS19980 0.49 -0.5 732,388 - RS_RS19980 0.50 +1.2 732,594 - RS_RS19980 0.82 -0.6 732,594 - RS_RS19980 0.82 -0.3 732,594 - RS_RS19980 0.82 +1.0 732,672 + -0.7 732,673 - +1.3 732,673 - +1.0 732,748 + -1.1 732,781 + -0.1 732,781 + +1.3 732,782 - -0.5 732,782 - +0.2 732,782 - -0.2 732,782 - -1.3 732,782 - +0.3 732,936 + RS_RS19985 0.25 +3.8 732,936 + RS_RS19985 0.25 +1.2 732,937 - RS_RS19985 0.25 +2.4 733,000 - RS_RS19985 0.40 -2.3 733,095 + RS_RS19985 0.62 +0.1 733,095 + RS_RS19985 0.62 -1.0 733,096 - RS_RS19985 0.62 +0.4 733,096 - RS_RS19985 0.62 +0.1 733,096 - RS_RS19985 0.62 -1.3 733,346 + +0.2 733,346 + +0.9 733,346 + +0.9 733,346 + -0.2 733,347 - +0.5 733,347 - +0.7 733,347 - -1.3 733,347 - +0.7 733,347 - -1.3 733,347 - +0.9 733,357 + +0.7 733,357 + +0.1 733,357 + +0.7 733,399 + RS_RS19990 0.13 -1.2 733,400 - RS_RS19990 0.13 +0.5 733,441 + RS_RS19990 0.23 -1.5 733,441 + RS_RS19990 0.23 -2.6 733,542 + RS_RS19990 0.46 +1.3
Or see this region's nucleotide sequence