Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19960 and RS_RS19965 are separated by 148 nucleotides RS_RS19965 and RS_RS19970 are separated by 252 nucleotides RS_RS19970 and RS_RS19975 are separated by 347 nucleotides
RS_RS19960: RS_RS19960 - MBL fold metallo-hydrolase, at 728,860 to 729,240
_RS19960
RS_RS19965: RS_RS19965 - MBL fold metallo-hydrolase, at 729,389 to 729,856
_RS19965
RS_RS19970: RS_RS19970 - VOC family protein, at 730,109 to 730,606
_RS19970
RS_RS19975: RS_RS19975 - chemotaxis protein CheV, at 730,954 to 731,895
_RS19975
Position (kb) 730
731 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 729.263 kb on - strand at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.474 kb on + strand, within RS_RS19965 at 729.475 kb on - strand, within RS_RS19965 at 729.475 kb on - strand, within RS_RS19965 at 729.475 kb on - strand, within RS_RS19965 at 729.602 kb on + strand, within RS_RS19965 at 729.603 kb on - strand, within RS_RS19965 at 729.603 kb on - strand, within RS_RS19965 at 729.603 kb on - strand, within RS_RS19965 at 729.603 kb on - strand, within RS_RS19965 at 729.611 kb on - strand, within RS_RS19965 at 729.648 kb on + strand, within RS_RS19965 at 729.648 kb on + strand, within RS_RS19965 at 729.649 kb on - strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.744 kb on + strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.745 kb on - strand, within RS_RS19965 at 729.977 kb on - strand at 730.227 kb on - strand, within RS_RS19970 at 730.227 kb on - strand, within RS_RS19970 at 730.486 kb on - strand, within RS_RS19970 at 730.542 kb on + strand, within RS_RS19970 at 730.543 kb on - strand, within RS_RS19970 at 730.576 kb on - strand at 730.576 kb on - strand at 730.576 kb on - strand at 730.931 kb on + strand at 730.931 kb on + strand at 730.931 kb on + strand at 730.931 kb on + strand at 730.931 kb on + strand at 730.931 kb on + strand at 730.932 kb on - strand at 730.932 kb on - strand at 730.932 kb on - strand at 730.932 kb on - strand at 731.242 kb on + strand, within RS_RS19975 at 731.243 kb on - strand, within RS_RS19975 at 731.243 kb on - strand, within RS_RS19975
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 729,263 - +0.0 729,474 + RS_RS19965 0.18 -0.7 729,474 + RS_RS19965 0.18 -0.1 729,474 + RS_RS19965 0.18 +1.4 729,474 + RS_RS19965 0.18 +0.9 729,474 + RS_RS19965 0.18 +0.9 729,474 + RS_RS19965 0.18 +0.2 729,474 + RS_RS19965 0.18 +0.1 729,474 + RS_RS19965 0.18 +1.2 729,475 - RS_RS19965 0.18 +2.4 729,475 - RS_RS19965 0.18 -0.4 729,475 - RS_RS19965 0.18 -0.0 729,602 + RS_RS19965 0.46 +0.9 729,603 - RS_RS19965 0.46 -0.1 729,603 - RS_RS19965 0.46 +1.1 729,603 - RS_RS19965 0.46 -2.0 729,603 - RS_RS19965 0.46 -1.4 729,611 - RS_RS19965 0.47 -1.4 729,648 + RS_RS19965 0.55 -0.5 729,648 + RS_RS19965 0.55 +1.5 729,649 - RS_RS19965 0.56 +0.5 729,744 + RS_RS19965 0.76 -0.8 729,744 + RS_RS19965 0.76 +1.0 729,744 + RS_RS19965 0.76 -1.5 729,744 + RS_RS19965 0.76 +0.1 729,744 + RS_RS19965 0.76 -1.2 729,744 + RS_RS19965 0.76 +0.4 729,744 + RS_RS19965 0.76 +0.2 729,745 - RS_RS19965 0.76 +0.9 729,745 - RS_RS19965 0.76 -0.7 729,745 - RS_RS19965 0.76 -1.2 729,745 - RS_RS19965 0.76 +0.7 729,745 - RS_RS19965 0.76 +0.3 729,977 - +3.5 730,227 - RS_RS19970 0.24 -0.0 730,227 - RS_RS19970 0.24 -0.3 730,486 - RS_RS19970 0.76 -0.2 730,542 + RS_RS19970 0.87 +2.6 730,543 - RS_RS19970 0.87 +1.2 730,576 - +0.0 730,576 - +0.1 730,576 - +0.8 730,931 + -1.1 730,931 + +1.3 730,931 + +1.3 730,931 + +1.8 730,931 + -0.3 730,931 + -1.9 730,932 - -0.1 730,932 - -1.4 730,932 - +1.8 730,932 - +0.9 731,242 + RS_RS19975 0.31 +0.3 731,243 - RS_RS19975 0.31 -0.8 731,243 - RS_RS19975 0.31 -0.7
Or see this region's nucleotide sequence