Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19270 and RS_RS19275 are separated by 27 nucleotides RS_RS19275 and RS_RS19280 overlap by 4 nucleotides
RS_RS19270: RS_RS19270 - HlyD family secretion protein, at 551,701 to 552,792
_RS19270
RS_RS19275: RS_RS19275 - MFS transporter, at 552,820 to 554,439
_RS19275
RS_RS19280: RS_RS19280 - TolC family protein, at 554,436 to 555,923
_RS19280
Position (kb) 552
553
554
555 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 552.161 kb on + strand, within RS_RS19270 at 552.668 kb on + strand, within RS_RS19270 at 552.668 kb on + strand, within RS_RS19270 at 552.669 kb on - strand, within RS_RS19270 at 552.669 kb on - strand, within RS_RS19270 at 552.669 kb on - strand, within RS_RS19270 at 552.669 kb on - strand, within RS_RS19270 at 552.669 kb on - strand, within RS_RS19270 at 552.786 kb on + strand at 552.786 kb on + strand at 552.786 kb on + strand at 552.787 kb on - strand at 552.787 kb on - strand at 552.787 kb on - strand at 552.787 kb on - strand at 552.896 kb on + strand at 552.896 kb on + strand at 552.896 kb on + strand at 552.896 kb on + strand at 552.896 kb on + strand at 552.897 kb on - strand at 552.897 kb on - strand at 552.897 kb on - strand at 553.213 kb on + strand, within RS_RS19275 at 553.213 kb on + strand, within RS_RS19275 at 553.213 kb on + strand, within RS_RS19275 at 553.214 kb on - strand, within RS_RS19275 at 553.379 kb on + strand, within RS_RS19275 at 553.856 kb on + strand, within RS_RS19275 at 554.199 kb on - strand, within RS_RS19275 at 554.623 kb on + strand, within RS_RS19280 at 554.623 kb on + strand, within RS_RS19280 at 554.623 kb on + strand, within RS_RS19280 at 554.707 kb on + strand, within RS_RS19280 at 554.708 kb on - strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.843 kb on - strand, within RS_RS19280 at 554.843 kb on - strand, within RS_RS19280 at 554.843 kb on - strand, within RS_RS19280 at 554.945 kb on - strand, within RS_RS19280 at 554.945 kb on - strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.344 kb on - strand, within RS_RS19280 at 555.349 kb on + strand, within RS_RS19280 at 555.350 kb on - strand, within RS_RS19280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 552,161 + RS_RS19270 0.42 +0.3 552,668 + RS_RS19270 0.89 -2.3 552,668 + RS_RS19270 0.89 -0.0 552,669 - RS_RS19270 0.89 -0.1 552,669 - RS_RS19270 0.89 -1.8 552,669 - RS_RS19270 0.89 -0.9 552,669 - RS_RS19270 0.89 +0.5 552,669 - RS_RS19270 0.89 -1.4 552,786 + +0.5 552,786 + +1.0 552,786 + +0.7 552,787 - -2.5 552,787 - -0.0 552,787 - +0.2 552,787 - -0.5 552,896 + +2.8 552,896 + -0.4 552,896 + +0.8 552,896 + -0.1 552,896 + -0.7 552,897 - +1.5 552,897 - -0.2 552,897 - +1.1 553,213 + RS_RS19275 0.24 -1.4 553,213 + RS_RS19275 0.24 -1.8 553,213 + RS_RS19275 0.24 -1.0 553,214 - RS_RS19275 0.24 -0.5 553,379 + RS_RS19275 0.35 +0.4 553,856 + RS_RS19275 0.64 +0.5 554,199 - RS_RS19275 0.85 -0.8 554,623 + RS_RS19280 0.13 +0.5 554,623 + RS_RS19280 0.13 +0.2 554,623 + RS_RS19280 0.13 +0.2 554,707 + RS_RS19280 0.18 +0.6 554,708 - RS_RS19280 0.18 -1.4 554,842 + RS_RS19280 0.27 -0.5 554,842 + RS_RS19280 0.27 -1.5 554,842 + RS_RS19280 0.27 +0.7 554,842 + RS_RS19280 0.27 +0.4 554,842 + RS_RS19280 0.27 -0.5 554,843 - RS_RS19280 0.27 -0.9 554,843 - RS_RS19280 0.27 +0.2 554,843 - RS_RS19280 0.27 +0.6 554,945 - RS_RS19280 0.34 -0.9 554,945 - RS_RS19280 0.34 +1.7 555,343 + RS_RS19280 0.61 -1.2 555,343 + RS_RS19280 0.61 -0.6 555,343 + RS_RS19280 0.61 -0.1 555,343 + RS_RS19280 0.61 +0.3 555,343 + RS_RS19280 0.61 -0.4 555,343 + RS_RS19280 0.61 +0.5 555,344 - RS_RS19280 0.61 -0.7 555,349 + RS_RS19280 0.61 +1.9 555,350 - RS_RS19280 0.61 +0.9
Or see this region's nucleotide sequence