Experiment: Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01035 and RS_RS01040 are separated by 93 nucleotides RS_RS01040 and RS_RS01045 are separated by 168 nucleotides RS_RS01045 and RS_RS01050 are separated by 263 nucleotides RS_RS01050 and RS_RS01055 are separated by 40 nucleotides
RS_RS01035: RS_RS01035 - membrane protein, at 233,036 to 233,449
_RS01035
RS_RS01040: RS_RS01040 - transcriptional regulator, at 233,543 to 233,938
_RS01040
RS_RS01045: RS_RS01045 - membrane protein, at 234,107 to 234,688
_RS01045
RS_RS01050: RS_RS01050 - aspartate/glutamate racemase family protein, at 234,952 to 235,641
_RS01050
RS_RS01055: RS_RS01055 - GMP synthase, at 235,682 to 236,398
_RS01055
Position (kb) 234
235 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 233.215 kb on - strand, within RS_RS01035 at 233.215 kb on - strand, within RS_RS01035 at 233.215 kb on - strand, within RS_RS01035 at 233.215 kb on - strand, within RS_RS01035 at 233.358 kb on + strand, within RS_RS01035 at 233.358 kb on + strand, within RS_RS01035 at 233.358 kb on + strand, within RS_RS01035 at 233.359 kb on - strand, within RS_RS01035 at 233.376 kb on + strand, within RS_RS01035 at 233.376 kb on + strand, within RS_RS01035 at 233.376 kb on + strand, within RS_RS01035 at 233.376 kb on + strand, within RS_RS01035 at 233.376 kb on + strand, within RS_RS01035 at 233.376 kb on + strand, within RS_RS01035 at 233.377 kb on - strand, within RS_RS01035 at 233.377 kb on - strand, within RS_RS01035 at 233.377 kb on - strand, within RS_RS01035 at 233.382 kb on + strand, within RS_RS01035 at 233.383 kb on - strand, within RS_RS01035 at 233.397 kb on + strand, within RS_RS01035 at 233.436 kb on + strand at 233.436 kb on + strand at 233.443 kb on + strand at 233.488 kb on + strand at 233.540 kb on - strand at 233.664 kb on - strand, within RS_RS01040 at 233.796 kb on - strand, within RS_RS01040 at 233.917 kb on - strand at 233.917 kb on - strand at 233.980 kb on + strand at 233.980 kb on + strand at 233.981 kb on - strand at 233.981 kb on - strand at 234.234 kb on + strand, within RS_RS01045 at 234.235 kb on - strand, within RS_RS01045 at 234.330 kb on + strand, within RS_RS01045 at 234.330 kb on + strand, within RS_RS01045 at 234.331 kb on - strand, within RS_RS01045 at 234.331 kb on - strand, within RS_RS01045 at 234.331 kb on - strand, within RS_RS01045 at 234.492 kb on + strand, within RS_RS01045 at 234.774 kb on + strand at 234.774 kb on + strand at 234.775 kb on - strand at 234.967 kb on + strand at 234.968 kb on - strand at 234.968 kb on - strand at 235.063 kb on + strand, within RS_RS01050 at 235.064 kb on - strand, within RS_RS01050 at 235.175 kb on - strand, within RS_RS01050 at 235.175 kb on - strand, within RS_RS01050 at 235.454 kb on + strand, within RS_RS01050 at 235.454 kb on + strand, within RS_RS01050 at 235.455 kb on - strand, within RS_RS01050 at 235.455 kb on - strand, within RS_RS01050 at 235.589 kb on + strand at 235.589 kb on + strand at 235.589 kb on + strand at 235.590 kb on - strand at 235.590 kb on - strand at 235.590 kb on - strand at 235.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct remove 233,215 - RS_RS01035 0.43 -1.2 233,215 - RS_RS01035 0.43 +0.9 233,215 - RS_RS01035 0.43 +0.2 233,215 - RS_RS01035 0.43 +0.2 233,358 + RS_RS01035 0.78 +2.0 233,358 + RS_RS01035 0.78 +0.7 233,358 + RS_RS01035 0.78 +2.8 233,359 - RS_RS01035 0.78 +0.3 233,376 + RS_RS01035 0.82 -2.1 233,376 + RS_RS01035 0.82 -0.8 233,376 + RS_RS01035 0.82 +2.0 233,376 + RS_RS01035 0.82 +2.0 233,376 + RS_RS01035 0.82 -0.1 233,376 + RS_RS01035 0.82 -0.6 233,377 - RS_RS01035 0.82 -3.2 233,377 - RS_RS01035 0.82 +0.3 233,377 - RS_RS01035 0.82 -0.7 233,382 + RS_RS01035 0.84 -0.9 233,383 - RS_RS01035 0.84 +0.9 233,397 + RS_RS01035 0.87 +0.6 233,436 + -0.1 233,436 + -0.3 233,443 + -1.1 233,488 + +0.0 233,540 - -1.4 233,664 - RS_RS01040 0.31 -0.3 233,796 - RS_RS01040 0.64 -0.5 233,917 - -0.1 233,917 - +0.4 233,980 + +0.7 233,980 + +0.2 233,981 - +0.7 233,981 - -0.8 234,234 + RS_RS01045 0.22 -0.4 234,235 - RS_RS01045 0.22 -0.7 234,330 + RS_RS01045 0.38 -0.9 234,330 + RS_RS01045 0.38 -0.7 234,331 - RS_RS01045 0.38 -0.8 234,331 - RS_RS01045 0.38 +0.4 234,331 - RS_RS01045 0.38 -1.5 234,492 + RS_RS01045 0.66 -0.2 234,774 + -1.8 234,774 + +0.6 234,775 - +0.1 234,967 + -0.2 234,968 - -1.6 234,968 - +2.3 235,063 + RS_RS01050 0.16 -0.4 235,064 - RS_RS01050 0.16 +0.6 235,175 - RS_RS01050 0.32 +0.2 235,175 - RS_RS01050 0.32 -0.6 235,454 + RS_RS01050 0.73 -0.1 235,454 + RS_RS01050 0.73 +1.7 235,455 - RS_RS01050 0.73 +1.4 235,455 - RS_RS01050 0.73 -1.6 235,589 + -0.3 235,589 + -1.1 235,589 + +0.4 235,590 - +1.4 235,590 - -0.6 235,590 - +1.2 235,590 - +0.8
Or see this region's nucleotide sequence