Experiment: KB with Matrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4633 and Psyr_4634 are separated by 97 nucleotides Psyr_4634 and Psyr_4635 are separated by 98 nucleotides Psyr_4635 and Psyr_4636 overlap by 10 nucleotides
Psyr_4633: Psyr_4633 - SpoVR, at 5,493,757 to 5,495,319
_4633
Psyr_4634: Psyr_4634 - Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein, at 5,495,417 to 5,496,643
_4634
Psyr_4635: Psyr_4635 - 7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK, at 5,496,742 to 5,497,266
_4635
Psyr_4636: Psyr_4636 - Dihydroneopterin aldolase family:Dihydroneopterin aldolase, at 5,497,257 to 5,497,610
_4636
Position (kb) 5495
5496
5497 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5494.480 kb on + strand, within Psyr_4633 at 5494.480 kb on + strand, within Psyr_4633 at 5494.480 kb on + strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.565 kb on - strand, within Psyr_4633 at 5494.618 kb on + strand, within Psyr_4633 at 5494.618 kb on + strand, within Psyr_4633 at 5494.619 kb on - strand, within Psyr_4633 at 5494.619 kb on - strand, within Psyr_4633 at 5494.640 kb on - strand, within Psyr_4633 at 5494.729 kb on + strand, within Psyr_4633 at 5494.729 kb on + strand, within Psyr_4633 at 5494.730 kb on - strand, within Psyr_4633 at 5494.730 kb on - strand, within Psyr_4633 at 5494.732 kb on + strand, within Psyr_4633 at 5494.732 kb on + strand, within Psyr_4633 at 5494.733 kb on - strand, within Psyr_4633 at 5494.733 kb on - strand, within Psyr_4633 at 5494.741 kb on - strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.772 kb on - strand, within Psyr_4633 at 5494.772 kb on - strand, within Psyr_4633 at 5494.909 kb on + strand, within Psyr_4633 at 5494.909 kb on + strand, within Psyr_4633 at 5494.909 kb on + strand, within Psyr_4633 at 5494.910 kb on - strand, within Psyr_4633 at 5494.910 kb on - strand, within Psyr_4633 at 5495.030 kb on + strand, within Psyr_4633 at 5495.030 kb on + strand, within Psyr_4633 at 5495.031 kb on - strand, within Psyr_4633 at 5495.045 kb on - strand, within Psyr_4633 at 5495.045 kb on - strand, within Psyr_4633 at 5495.080 kb on + strand, within Psyr_4633 at 5495.080 kb on + strand, within Psyr_4633 at 5495.080 kb on + strand, within Psyr_4633 at 5495.080 kb on + strand, within Psyr_4633 at 5495.081 kb on - strand, within Psyr_4633 at 5495.081 kb on - strand, within Psyr_4633 at 5495.081 kb on - strand, within Psyr_4633 at 5495.081 kb on - strand, within Psyr_4633 at 5495.299 kb on - strand at 5495.317 kb on + strand at 5495.341 kb on - strand at 5495.404 kb on - strand at 5495.426 kb on + strand at 5495.426 kb on + strand at 5495.426 kb on + strand at 5495.426 kb on + strand at 5496.093 kb on + strand, within Psyr_4634 at 5496.105 kb on + strand, within Psyr_4634 at 5496.623 kb on + strand at 5496.624 kb on - strand at 5496.692 kb on + strand at 5496.692 kb on + strand at 5496.692 kb on + strand at 5496.692 kb on + strand at 5496.693 kb on - strand at 5496.747 kb on + strand at 5496.747 kb on + strand at 5496.748 kb on - strand at 5496.904 kb on + strand, within Psyr_4635
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Matrine 10 mM remove 5,494,480 + Psyr_4633 0.46 -1.4 5,494,480 + Psyr_4633 0.46 -1.3 5,494,480 + Psyr_4633 0.46 -0.1 5,494,481 - Psyr_4633 0.46 +0.5 5,494,481 - Psyr_4633 0.46 +0.3 5,494,481 - Psyr_4633 0.46 -0.8 5,494,481 - Psyr_4633 0.46 -0.3 5,494,558 + Psyr_4633 0.51 -0.7 5,494,558 + Psyr_4633 0.51 +0.4 5,494,558 + Psyr_4633 0.51 -0.3 5,494,558 + Psyr_4633 0.51 +0.5 5,494,558 + Psyr_4633 0.51 +0.9 5,494,558 + Psyr_4633 0.51 -0.6 5,494,558 + Psyr_4633 0.51 +0.3 5,494,559 - Psyr_4633 0.51 -0.5 5,494,559 - Psyr_4633 0.51 +0.4 5,494,559 - Psyr_4633 0.51 +1.0 5,494,559 - Psyr_4633 0.51 -0.5 5,494,559 - Psyr_4633 0.51 +0.9 5,494,559 - Psyr_4633 0.51 +0.2 5,494,565 - Psyr_4633 0.52 +0.0 5,494,618 + Psyr_4633 0.55 -0.3 5,494,618 + Psyr_4633 0.55 -0.4 5,494,619 - Psyr_4633 0.55 +0.4 5,494,619 - Psyr_4633 0.55 -0.7 5,494,640 - Psyr_4633 0.56 +0.6 5,494,729 + Psyr_4633 0.62 +0.1 5,494,729 + Psyr_4633 0.62 +0.2 5,494,730 - Psyr_4633 0.62 +0.5 5,494,730 - Psyr_4633 0.62 -0.0 5,494,732 + Psyr_4633 0.62 -0.0 5,494,732 + Psyr_4633 0.62 -0.5 5,494,733 - Psyr_4633 0.62 -1.6 5,494,733 - Psyr_4633 0.62 +1.3 5,494,741 - Psyr_4633 0.63 -0.3 5,494,771 + Psyr_4633 0.65 +0.5 5,494,771 + Psyr_4633 0.65 +0.1 5,494,771 + Psyr_4633 0.65 -1.1 5,494,771 + Psyr_4633 0.65 +1.6 5,494,771 + Psyr_4633 0.65 +0.0 5,494,772 - Psyr_4633 0.65 -1.2 5,494,772 - Psyr_4633 0.65 +0.6 5,494,909 + Psyr_4633 0.74 -0.0 5,494,909 + Psyr_4633 0.74 +0.5 5,494,909 + Psyr_4633 0.74 -0.3 5,494,910 - Psyr_4633 0.74 +0.6 5,494,910 - Psyr_4633 0.74 +0.5 5,495,030 + Psyr_4633 0.81 -0.3 5,495,030 + Psyr_4633 0.81 +0.4 5,495,031 - Psyr_4633 0.82 +0.7 5,495,045 - Psyr_4633 0.82 -0.8 5,495,045 - Psyr_4633 0.82 -1.0 5,495,080 + Psyr_4633 0.85 -1.1 5,495,080 + Psyr_4633 0.85 -0.3 5,495,080 + Psyr_4633 0.85 +0.6 5,495,080 + Psyr_4633 0.85 +1.3 5,495,081 - Psyr_4633 0.85 -0.1 5,495,081 - Psyr_4633 0.85 -1.2 5,495,081 - Psyr_4633 0.85 +1.0 5,495,081 - Psyr_4633 0.85 -0.8 5,495,299 - +0.8 5,495,317 + +0.4 5,495,341 - -0.2 5,495,404 - +0.2 5,495,426 + +0.3 5,495,426 + +0.5 5,495,426 + +0.3 5,495,426 + -0.9 5,496,093 + Psyr_4634 0.55 -0.7 5,496,105 + Psyr_4634 0.56 -2.8 5,496,623 + +0.3 5,496,624 - +0.5 5,496,692 + +0.7 5,496,692 + -0.4 5,496,692 + -1.7 5,496,692 + +0.3 5,496,693 - +0.4 5,496,747 + +0.3 5,496,747 + +0.3 5,496,748 - -1.3 5,496,904 + Psyr_4635 0.31 -0.3
Or see this region's nucleotide sequence