Experiment: KB with Matrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4091 and Psyr_4092 are separated by 2 nucleotides Psyr_4092 and Psyr_4093 are separated by 57 nucleotides Psyr_4093 and Psyr_4094 are separated by 109 nucleotides
Psyr_4091: Psyr_4091 - 8-oxo-dGTPase, at 4,877,481 to 4,878,431
_4091
Psyr_4092: Psyr_4092 - Glutathione S-transferase, N-terminal, at 4,878,434 to 4,879,060
_4092
Psyr_4093: Psyr_4093 - glutamate N-acetyltransferase, at 4,879,118 to 4,880,335
_4093
Psyr_4094: Psyr_4094 - protein translocase subunit secA, at 4,880,445 to 4,883,186
_4094
Position (kb) 4879
4880
4881 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4878.378 kb on + strand at 4878.486 kb on + strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.487 kb on - strand at 4878.501 kb on + strand, within Psyr_4092 at 4878.501 kb on + strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.502 kb on - strand, within Psyr_4092 at 4878.535 kb on - strand, within Psyr_4092 at 4878.725 kb on - strand, within Psyr_4092 at 4878.840 kb on + strand, within Psyr_4092 at 4878.841 kb on - strand, within Psyr_4092 at 4878.841 kb on - strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.915 kb on + strand, within Psyr_4092 at 4878.916 kb on - strand, within Psyr_4092 at 4878.916 kb on - strand, within Psyr_4092 at 4879.026 kb on + strand at 4879.027 kb on - strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.149 kb on + strand at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.263 kb on + strand, within Psyr_4093 at 4879.264 kb on - strand, within Psyr_4093 at 4879.264 kb on - strand, within Psyr_4093 at 4879.298 kb on + strand, within Psyr_4093 at 4879.298 kb on + strand, within Psyr_4093 at 4879.313 kb on + strand, within Psyr_4093 at 4879.313 kb on + strand, within Psyr_4093 at 4879.314 kb on - strand, within Psyr_4093 at 4879.372 kb on + strand, within Psyr_4093 at 4879.373 kb on - strand, within Psyr_4093 at 4879.373 kb on - strand, within Psyr_4093 at 4879.759 kb on - strand, within Psyr_4093 at 4880.053 kb on + strand, within Psyr_4093 at 4880.054 kb on - strand, within Psyr_4093 at 4880.122 kb on - strand, within Psyr_4093 at 4880.427 kb on + strand at 4880.427 kb on + strand at 4880.428 kb on - strand at 4880.428 kb on - strand at 4880.428 kb on - strand at 4880.428 kb on - strand at 4880.431 kb on - strand at 4880.431 kb on - strand at 4880.431 kb on - strand at 4880.446 kb on + strand at 4880.446 kb on + strand at 4880.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Matrine 10 mM remove 4,878,378 + -2.0 4,878,486 + -1.6 4,878,487 - +0.7 4,878,487 - +0.7 4,878,487 - -0.0 4,878,487 - -1.1 4,878,487 - +0.3 4,878,487 - +0.1 4,878,487 - -0.2 4,878,487 - +0.0 4,878,487 - -0.5 4,878,501 + Psyr_4092 0.11 -1.6 4,878,501 + Psyr_4092 0.11 -0.8 4,878,502 - Psyr_4092 0.11 +0.7 4,878,502 - Psyr_4092 0.11 +0.1 4,878,502 - Psyr_4092 0.11 +0.8 4,878,502 - Psyr_4092 0.11 +0.3 4,878,502 - Psyr_4092 0.11 -0.9 4,878,535 - Psyr_4092 0.16 -0.3 4,878,725 - Psyr_4092 0.46 -0.2 4,878,840 + Psyr_4092 0.65 +1.6 4,878,841 - Psyr_4092 0.65 -0.1 4,878,841 - Psyr_4092 0.65 +1.8 4,878,915 + Psyr_4092 0.77 -0.5 4,878,915 + Psyr_4092 0.77 -1.3 4,878,915 + Psyr_4092 0.77 +0.5 4,878,916 - Psyr_4092 0.77 -2.2 4,878,916 - Psyr_4092 0.77 +1.2 4,879,026 + -1.2 4,879,027 - +0.8 4,879,149 + -0.4 4,879,149 + -1.2 4,879,149 + -1.8 4,879,149 + -1.2 4,879,263 + Psyr_4093 0.12 -0.4 4,879,263 + Psyr_4093 0.12 -1.2 4,879,263 + Psyr_4093 0.12 -0.0 4,879,263 + Psyr_4093 0.12 +0.5 4,879,264 - Psyr_4093 0.12 -1.6 4,879,264 - Psyr_4093 0.12 -1.0 4,879,298 + Psyr_4093 0.15 -0.7 4,879,298 + Psyr_4093 0.15 +1.7 4,879,313 + Psyr_4093 0.16 -2.0 4,879,313 + Psyr_4093 0.16 -0.9 4,879,314 - Psyr_4093 0.16 -0.9 4,879,372 + Psyr_4093 0.21 -0.4 4,879,373 - Psyr_4093 0.21 -1.0 4,879,373 - Psyr_4093 0.21 +0.2 4,879,759 - Psyr_4093 0.53 +1.9 4,880,053 + Psyr_4093 0.77 +1.6 4,880,054 - Psyr_4093 0.77 -1.0 4,880,122 - Psyr_4093 0.82 -0.4 4,880,427 + -0.3 4,880,427 + +0.2 4,880,428 - -1.5 4,880,428 - +0.8 4,880,428 - -0.3 4,880,428 - +0.4 4,880,431 - -0.5 4,880,431 - -1.2 4,880,431 - +0.1 4,880,446 + +1.0 4,880,446 + -2.2 4,880,447 - +0.6
Or see this region's nucleotide sequence