Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3900

Experiment: KB with Matrine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3899 and Psyr_3900 are separated by 132 nucleotidesPsyr_3900 and Psyr_3901 are separated by 453 nucleotides Psyr_3899: Psyr_3899 - Molybdopterin oxidoreductase:molybdopterin dinucleotide-binding region, at 4,639,221 to 4,641,329 _3899 Psyr_3900: Psyr_3900 - conserved hypothetical protein, at 4,641,462 to 4,641,755 _3900 Psyr_3901: Psyr_3901 - ornithine carbamoyltransferase, at 4,642,209 to 4,643,129 _3901 Position (kb) 4641 4642Strain fitness (log2 ratio) -2 -1 0 1 2at 4640.613 kb on - strand, within Psyr_3899at 4640.655 kb on + strand, within Psyr_3899at 4640.655 kb on + strand, within Psyr_3899at 4640.655 kb on + strand, within Psyr_3899at 4640.655 kb on + strand, within Psyr_3899at 4640.656 kb on - strand, within Psyr_3899at 4640.656 kb on - strand, within Psyr_3899at 4640.869 kb on + strand, within Psyr_3899at 4640.869 kb on + strand, within Psyr_3899at 4640.869 kb on + strand, within Psyr_3899at 4640.869 kb on + strand, within Psyr_3899at 4640.869 kb on + strand, within Psyr_3899at 4640.869 kb on + strand, within Psyr_3899at 4640.869 kb on + strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.870 kb on - strand, within Psyr_3899at 4640.956 kb on + strand, within Psyr_3899at 4640.956 kb on + strand, within Psyr_3899at 4640.956 kb on + strand, within Psyr_3899at 4640.956 kb on + strand, within Psyr_3899at 4640.956 kb on + strand, within Psyr_3899at 4640.956 kb on + strand, within Psyr_3899at 4640.956 kb on + strand, within Psyr_3899at 4640.957 kb on - strand, within Psyr_3899at 4640.957 kb on - strand, within Psyr_3899at 4640.980 kb on + strand, within Psyr_3899at 4640.980 kb on + strand, within Psyr_3899at 4640.981 kb on - strand, within Psyr_3899at 4640.984 kb on + strand, within Psyr_3899at 4640.984 kb on + strand, within Psyr_3899at 4640.984 kb on + strand, within Psyr_3899at 4640.984 kb on + strand, within Psyr_3899at 4640.984 kb on + strand, within Psyr_3899at 4640.984 kb on + strand, within Psyr_3899at 4640.984 kb on + strand, within Psyr_3899at 4640.985 kb on - strand, within Psyr_3899at 4640.985 kb on - strand, within Psyr_3899at 4640.985 kb on - strand, within Psyr_3899at 4640.985 kb on - strand, within Psyr_3899at 4640.985 kb on - strand, within Psyr_3899at 4641.008 kb on - strand, within Psyr_3899at 4641.185 kb on + strandat 4641.185 kb on + strandat 4641.186 kb on - strandat 4641.186 kb on - strandat 4641.186 kb on - strandat 4641.380 kb on + strandat 4641.380 kb on + strandat 4641.380 kb on + strandat 4641.380 kb on + strandat 4641.381 kb on - strandat 4641.381 kb on - strandat 4641.381 kb on - strandat 4641.381 kb on - strandat 4641.381 kb on - strandat 4641.698 kb on + strand, within Psyr_3900at 4641.698 kb on + strand, within Psyr_3900at 4641.699 kb on - strand, within Psyr_3900at 4641.775 kb on + strandat 4641.776 kb on - strandat 4641.780 kb on + strandat 4641.781 kb on - strandat 4641.781 kb on - strandat 4641.794 kb on + strandat 4641.794 kb on + strandat 4641.794 kb on + strandat 4641.795 kb on - strandat 4641.795 kb on - strandat 4641.795 kb on - strandat 4641.796 kb on + strandat 4641.796 kb on + strandat 4641.796 kb on + strandat 4641.897 kb on - strandat 4641.897 kb on - strandat 4641.899 kb on + strandat 4641.899 kb on + strandat 4641.899 kb on + strandat 4641.913 kb on + strandat 4641.914 kb on - strandat 4641.926 kb on + strandat 4641.927 kb on - strandat 4641.927 kb on - strandat 4641.927 kb on - strandat 4641.927 kb on - strandat 4641.927 kb on - strandat 4642.007 kb on - strandat 4642.022 kb on - strandat 4642.036 kb on + strandat 4642.036 kb on + strandat 4642.037 kb on - strandat 4642.037 kb on - strandat 4642.039 kb on + strandat 4642.039 kb on + strandat 4642.066 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Matrine 10 mM
remove
4,640,613 - Psyr_3899 0.66 -0.3
4,640,655 + Psyr_3899 0.68 +0.5
4,640,655 + Psyr_3899 0.68 +1.2
4,640,655 + Psyr_3899 0.68 +0.2
4,640,655 + Psyr_3899 0.68 -0.9
4,640,656 - Psyr_3899 0.68 -0.3
4,640,656 - Psyr_3899 0.68 +0.1
4,640,869 + Psyr_3899 0.78 -0.2
4,640,869 + Psyr_3899 0.78 -1.0
4,640,869 + Psyr_3899 0.78 +0.6
4,640,869 + Psyr_3899 0.78 +0.3
4,640,869 + Psyr_3899 0.78 -1.0
4,640,869 + Psyr_3899 0.78 +0.7
4,640,869 + Psyr_3899 0.78 +1.7
4,640,870 - Psyr_3899 0.78 +0.1
4,640,870 - Psyr_3899 0.78 -2.0
4,640,870 - Psyr_3899 0.78 -1.2
4,640,870 - Psyr_3899 0.78 -0.0
4,640,870 - Psyr_3899 0.78 -1.9
4,640,870 - Psyr_3899 0.78 +0.4
4,640,870 - Psyr_3899 0.78 -0.9
4,640,870 - Psyr_3899 0.78 +1.5
4,640,870 - Psyr_3899 0.78 +0.8
4,640,870 - Psyr_3899 0.78 +0.1
4,640,870 - Psyr_3899 0.78 -0.1
4,640,956 + Psyr_3899 0.82 -0.3
4,640,956 + Psyr_3899 0.82 -0.2
4,640,956 + Psyr_3899 0.82 +0.3
4,640,956 + Psyr_3899 0.82 +0.5
4,640,956 + Psyr_3899 0.82 -0.7
4,640,956 + Psyr_3899 0.82 +0.5
4,640,956 + Psyr_3899 0.82 +0.0
4,640,957 - Psyr_3899 0.82 +1.4
4,640,957 - Psyr_3899 0.82 -0.9
4,640,980 + Psyr_3899 0.83 +1.7
4,640,980 + Psyr_3899 0.83 -0.6
4,640,981 - Psyr_3899 0.83 -0.4
4,640,984 + Psyr_3899 0.84 +1.5
4,640,984 + Psyr_3899 0.84 +0.3
4,640,984 + Psyr_3899 0.84 +1.1
4,640,984 + Psyr_3899 0.84 -0.3
4,640,984 + Psyr_3899 0.84 +1.1
4,640,984 + Psyr_3899 0.84 -1.2
4,640,984 + Psyr_3899 0.84 +1.1
4,640,985 - Psyr_3899 0.84 +0.1
4,640,985 - Psyr_3899 0.84 -0.6
4,640,985 - Psyr_3899 0.84 -1.1
4,640,985 - Psyr_3899 0.84 +1.9
4,640,985 - Psyr_3899 0.84 +0.1
4,641,008 - Psyr_3899 0.85 -0.5
4,641,185 + -0.1
4,641,185 + -1.5
4,641,186 - -0.1
4,641,186 - -0.9
4,641,186 - -0.2
4,641,380 + +0.0
4,641,380 + -0.3
4,641,380 + -0.4
4,641,380 + -0.6
4,641,381 - +0.5
4,641,381 - +0.7
4,641,381 - +0.0
4,641,381 - -0.9
4,641,381 - +1.4
4,641,698 + Psyr_3900 0.80 -0.8
4,641,698 + Psyr_3900 0.80 +0.1
4,641,699 - Psyr_3900 0.81 -1.7
4,641,775 + -1.1
4,641,776 - -0.0
4,641,780 + -0.3
4,641,781 - +1.1
4,641,781 - -0.1
4,641,794 + -0.5
4,641,794 + +2.0
4,641,794 + -1.3
4,641,795 - +1.4
4,641,795 - -1.3
4,641,795 - +0.9
4,641,796 + +0.9
4,641,796 + -1.6
4,641,796 + +1.0
4,641,897 - -0.7
4,641,897 - +0.8
4,641,899 + -0.7
4,641,899 + +0.3
4,641,899 + -0.3
4,641,913 + +2.0
4,641,914 - -2.1
4,641,926 + +1.1
4,641,927 - +0.4
4,641,927 - -0.4
4,641,927 - -1.8
4,641,927 - +0.6
4,641,927 - +0.0
4,642,007 - +0.7
4,642,022 - +0.3
4,642,036 + +0.2
4,642,036 + -1.2
4,642,037 - -0.6
4,642,037 - +0.9
4,642,039 + -0.9
4,642,039 + +0.5
4,642,066 - +0.4

Or see this region's nucleotide sequence