Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2321

Experiment: KB with Matrine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Matrine 10 mM
2,695,823	-		Psyr_2320	0.35	-2.8
2,695,928	+		Psyr_2320	0.42	+1.0
2,695,934	+		Psyr_2320	0.43	+0.2
2,695,935	-		Psyr_2320	0.43	-1.8
2,695,951	+		Psyr_2320	0.44	-0.1
2,695,983	-		Psyr_2320	0.46	-2.4
2,696,196	+		Psyr_2320	0.60	-0.5
2,696,196	+		Psyr_2320	0.60	-2.5
2,696,266	-		Psyr_2320	0.65	-1.4
2,696,336	+		Psyr_2320	0.69	+0.8
2,696,347	-		Psyr_2320	0.70	-0.7
2,696,433	-		Psyr_2320	0.75	-2.7
2,696,466	+		Psyr_2320	0.78	-0.7
2,696,467	-		Psyr_2320	0.78	+0.1
2,696,554	-		Psyr_2320	0.83	-1.8
2,696,554	-		Psyr_2320	0.83	+0.4
2,696,555	+		Psyr_2320	0.83	+0.6
2,696,555	+		Psyr_2320	0.83	-1.2
2,696,555	+		Psyr_2320	0.83	-0.5
2,696,555	+		Psyr_2320	0.83	-1.1
2,696,555	+		Psyr_2320	0.83	-0.6
2,696,556	-		Psyr_2320	0.83	+0.2
2,696,556	-		Psyr_2320	0.83	-0.0
2,696,556	-		Psyr_2320	0.83	-1.6
2,696,559	+		Psyr_2320	0.84	+0.9
2,696,560	-		Psyr_2320	0.84	+0.8
2,696,561	+		Psyr_2320	0.84	-1.4
2,696,598	-		Psyr_2320	0.86	-0.5
2,696,617	-		Psyr_2320	0.87	+0.6
2,696,617	-		Psyr_2320	0.87	-0.1
2,696,617	-		Psyr_2320	0.87	+1.3
2,696,622	+		Psyr_2320	0.88	+1.2
2,696,623	-		Psyr_2320	0.88	+3.0
2,696,623	-		Psyr_2320	0.88	+1.2
2,696,666	+				+0.4
2,696,669	+				+0.8
2,696,670	-				-0.3
2,696,670	-				-0.7
2,696,754	+				+0.8
2,696,754	+				-0.3
2,696,755	-				-0.7
2,696,755	-				+0.1
2,696,755	-				-1.0
2,696,756	+				-0.4
2,696,756	+				-0.0
2,696,756	+				+0.2
2,696,756	+				-0.6
2,696,757	-				-2.2
2,696,757	-				-0.5
2,696,757	-				-0.9
2,696,760	+				-0.1
2,696,760	+				+0.2
2,696,809	+				-0.8
2,696,841	+				-2.3
2,696,872	+				-2.9
2,696,873	-				+1.2
2,696,873	-				-2.5
2,696,999	+		Psyr_2321	0.12	-0.9
2,696,999	+		Psyr_2321	0.12	+1.8
2,697,000	-		Psyr_2321	0.12	+0.4
2,697,000	-		Psyr_2321	0.12	-1.8
2,697,073	+		Psyr_2321	0.17	-1.6
2,697,105	+		Psyr_2321	0.19	-1.6
2,697,157	+		Psyr_2321	0.23	+0.3
2,697,311	+		Psyr_2321	0.33	-2.9
2,697,311	+		Psyr_2321	0.33	+1.0
2,697,311	+		Psyr_2321	0.33	-0.5
2,697,312	-		Psyr_2321	0.33	-1.1
2,697,550	+		Psyr_2321	0.49	-1.6
2,697,551	-		Psyr_2321	0.49	+1.8
2,697,682	-		Psyr_2321	0.58	+0.6
2,697,685	+		Psyr_2321	0.58	-1.0
2,697,685	+		Psyr_2321	0.58	+0.2
2,697,685	+		Psyr_2321	0.58	-1.3
2,697,686	-		Psyr_2321	0.58	-1.6
2,697,686	-		Psyr_2321	0.58	-2.3
2,697,691	+		Psyr_2321	0.58	+0.0
2,697,804	+		Psyr_2321	0.66	-0.1
2,697,916	+		Psyr_2321	0.73	-0.1
2,697,920	+		Psyr_2321	0.74	-0.8
2,697,922	+		Psyr_2321	0.74	-1.4
2,697,922	+		Psyr_2321	0.74	-2.0
2,697,970	+		Psyr_2321	0.77	-1.4
2,697,973	-		Psyr_2321	0.77	-0.4
2,698,000	-		Psyr_2321	0.79	-1.9
2,698,006	+		Psyr_2321	0.79	+0.2
2,698,061	+		Psyr_2321	0.83	+0.2
2,698,061	+		Psyr_2321	0.83	-0.4
2,698,061	+		Psyr_2321	0.83	-0.4
2,698,062	-		Psyr_2321	0.83	-2.0
2,698,067	+		Psyr_2321	0.83	+1.2
2,698,067	+		Psyr_2321	0.83	+1.6
2,698,067	+		Psyr_2321	0.83	-0.4
2,698,068	-		Psyr_2321	0.83	-2.0
2,698,124	+		Psyr_2321	0.87	-0.6
2,698,124	+				-0.8
2,698,130	+		Psyr_2321	0.88	-0.1
2,698,130	+		Psyr_2321	0.88	-0.4
2,698,130	+		Psyr_2321	0.88	+0.3
2,698,130	+		Psyr_2321	0.88	-0.3
2,698,131	-		Psyr_2321	0.88	-1.3
2,698,131	-		Psyr_2321	0.88	-1.1
2,698,177	+				+1.2
2,698,177	+				-0.4
2,698,237	-				-1.1
2,698,262	+				-0.2
2,698,262	+				+0.1
2,698,262	+				+0.2
2,698,262	+				+0.2
2,698,262	+				-1.0
2,698,262	+				-0.8
2,698,262	+				-0.7
2,698,262	+				+1.3
2,698,263	-				-2.8
2,698,264	+				-0.8
2,698,264	+				+0.7
2,698,264	+				+1.1
2,698,264	+				-0.1
2,698,264	+				+0.9
2,698,264	+				+1.9
2,698,264	-				-0.5
2,698,265	-				-2.4
2,698,265	-				+0.4
2,698,265	-				-0.4
2,698,265	-				+0.2
2,698,265	-				+1.2
2,698,265	-				-0.2
2,698,269	-				-0.3
2,698,324	+				-0.8
2,698,325	-				-0.1
2,698,373	+				+1.0
2,698,373	+				-0.1
2,698,373	+				-0.9
2,698,374	-				-0.2
2,698,374	-				-0.3
2,698,377	+				-1.2
2,698,377	+				-0.4
2,698,378	-				+1.2
2,698,432	+				+0.4
2,698,432	+				-0.1
2,698,432	+				+0.9
2,698,432	+				-3.0
2,698,432	+				+0.0
2,698,432	+				+0.8
2,698,432	+				-0.4
2,698,432	+				+0.6
2,698,433	-				+0.5
2,698,433	-				+0.6
2,698,433	-				+0.2
2,698,458	+				+0.6
2,698,458	+				+0.4
2,698,458	+				-0.1
2,698,504	+				-0.1
2,698,504	+				+0.2
2,698,505	-				+0.2
2,698,505	-				+0.9
2,698,524	+				-1.1
2,698,525	-				+0.9
2,698,525	-				-0.1
2,698,527	+				-0.1
2,698,527	+				-0.2
2,698,527	+				-0.8
2,698,527	+				-1.0
2,698,528	-				+0.1
2,698,528	-				+1.2
2,698,528	-				+0.6
2,698,528	-				-1.5
2,698,528	-				+2.8
2,698,528	-				-3.1
2,698,556	-				-0.2
2,698,634	-		Psyr_2322	0.11	-0.4
2,698,634	-		Psyr_2322	0.11	+0.6
2,698,663	-		Psyr_2322	0.12	-2.1
2,698,687	+		Psyr_2322	0.13	+0.1
2,698,688	-		Psyr_2322	0.13	+0.6
2,698,693	+		Psyr_2322	0.13	-0.0
2,698,693	+		Psyr_2322	0.13	+0.2
2,698,750	+		Psyr_2322	0.15	+0.2
2,698,751	-		Psyr_2322	0.15	+1.9
2,698,751	-		Psyr_2322	0.15	+0.5
2,698,751	-		Psyr_2322	0.15	+0.2
2,698,751	-		Psyr_2322	0.15	+1.0
2,698,751	-		Psyr_2322	0.15	-0.9
2,698,751	-		Psyr_2322	0.15	+0.0
2,698,756	+		Psyr_2322	0.15	+0.8
2,698,756	+		Psyr_2322	0.15	-0.1
2,698,756	+		Psyr_2322	0.15	-1.0
2,698,756	+		Psyr_2322	0.15	+1.0
2,698,756	+		Psyr_2322	0.15	-1.3
2,698,757	-		Psyr_2322	0.15	+0.5
2,698,757	-		Psyr_2322	0.15	+0.2
2,698,757	-		Psyr_2322	0.15	+0.6
2,698,757	-		Psyr_2322	0.15	+0.0
2,698,757	-		Psyr_2322	0.15	-1.1
2,698,788	+		Psyr_2322	0.16	-0.6
2,698,813	+		Psyr_2322	0.17	-0.9
2,698,813	+		Psyr_2322	0.17	+0.5
2,698,814	-		Psyr_2322	0.17	-0.2
2,698,814	-		Psyr_2322	0.17	-0.2
2,698,814	-		Psyr_2322	0.17	-0.1
2,698,814	-		Psyr_2322	0.17	-1.1
2,698,814	-		Psyr_2322	0.17	-1.4
2,698,895	+		Psyr_2322	0.20	-1.4
2,698,895	+		Psyr_2322	0.20	+0.1
2,698,895	+		Psyr_2322	0.20	+0.6
2,698,896	-		Psyr_2322	0.20	-0.4
2,698,896	-		Psyr_2322	0.20	+0.2
2,698,896	-		Psyr_2322	0.20	-0.1
2,698,907	+		Psyr_2322	0.21	+0.4
2,698,907	+		Psyr_2322	0.21	-0.7
2,698,908	-		Psyr_2322	0.21	-0.6
2,698,908	-		Psyr_2322	0.21	+1.0
2,698,908	-		Psyr_2322	0.21	+0.2
2,698,908	-		Psyr_2322	0.21	-1.0
2,698,908	-		Psyr_2322	0.21	-0.2
2,699,037	+				+1.2
2,699,037	+		Psyr_2322	0.25	-0.4
2,699,143	+		Psyr_2322	0.29	+0.6
2,699,144	-		Psyr_2322	0.29	-0.7
2,699,144	-		Psyr_2322	0.29	-1.8
2,699,144	-		Psyr_2322	0.29	+0.4
2,699,144	-		Psyr_2322	0.29	-2.4
2,699,149	+		Psyr_2322	0.29	-0.7
2,699,149	+		Psyr_2322	0.29	-0.4
2,699,150	-		Psyr_2322	0.29	-0.6
2,699,150	-		Psyr_2322	0.29	+0.2
2,699,150	-		Psyr_2322	0.29	+0.2
2,699,160	-		Psyr_2322	0.30	+0.9
2,699,160	-		Psyr_2322	0.30	-0.4
2,699,206	+		Psyr_2322	0.32	+1.2
2,699,206	+		Psyr_2322	0.32	-2.6
2,699,206	+		Psyr_2322	0.32	-1.0
2,699,206	+		Psyr_2322	0.32	-0.7
2,699,206	+		Psyr_2322	0.32	+0.4
2,699,206	+		Psyr_2322	0.32	-1.3
2,699,206	+		Psyr_2322	0.32	-1.6
2,699,206	+		Psyr_2322	0.32	-0.1
2,699,213	-		Psyr_2322	0.32	-0.8
2,699,269	+		Psyr_2322	0.34	+0.2