Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0990

Experiment: KB with Matrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0989 and Psyr_0990 are separated by 169 nucleotidesPsyr_0990 and Psyr_0991 are separated by 309 nucleotides Psyr_0989: Psyr_0989 - Lysine exporter protein (LYSE/YGGA), at 1,119,347 to 1,119,979 _0989 Psyr_0990: Psyr_0990 - AMP-dependent synthetase and ligase, at 1,120,149 to 1,121,831 _0990 Psyr_0991: Psyr_0991 - Protein of unknown function DUF1302, at 1,122,141 to 1,124,078 _0991 Position (kb) 1120 1121 1122Strain fitness (log2 ratio) -2 -1 0 1 2at 1119.244 kb on + strandat 1119.244 kb on + strandat 1119.245 kb on - strandat 1119.248 kb on + strandat 1119.248 kb on + strandat 1119.248 kb on + strandat 1119.248 kb on + strandat 1119.248 kb on + strandat 1119.249 kb on - strandat 1119.306 kb on + strandat 1119.306 kb on + strandat 1119.350 kb on + strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.591 kb on - strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.695 kb on + strandat 1119.695 kb on + strand, within Psyr_0989at 1119.695 kb on + strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.815 kb on + strand, within Psyr_0989at 1120.109 kb on + strandat 1120.110 kb on - strandat 1120.110 kb on - strandat 1120.110 kb on - strandat 1120.148 kb on + strandat 1120.148 kb on + strandat 1120.148 kb on + strandat 1120.148 kb on + strandat 1120.148 kb on + strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.149 kb on - strandat 1120.260 kb on + strandat 1120.260 kb on + strandat 1120.260 kb on + strandat 1120.261 kb on - strandat 1120.278 kb on + strandat 1120.284 kb on + strandat 1120.285 kb on - strandat 1120.306 kb on + strandat 1120.306 kb on + strandat 1120.307 kb on - strandat 1120.324 kb on + strand, within Psyr_0990at 1120.324 kb on + strand, within Psyr_0990at 1120.324 kb on + strand, within Psyr_0990at 1120.389 kb on + strand, within Psyr_0990at 1120.533 kb on + strand, within Psyr_0990at 1120.533 kb on + strand, within Psyr_0990at 1120.533 kb on + strand, within Psyr_0990at 1120.534 kb on - strand, within Psyr_0990at 1120.534 kb on - strand, within Psyr_0990at 1120.621 kb on + strand, within Psyr_0990at 1120.621 kb on + strand, within Psyr_0990at 1120.622 kb on - strand, within Psyr_0990at 1120.622 kb on - strand, within Psyr_0990at 1120.622 kb on - strand, within Psyr_0990at 1120.632 kb on + strand, within Psyr_0990at 1120.633 kb on - strand, within Psyr_0990at 1120.633 kb on - strand, within Psyr_0990at 1120.665 kb on + strand, within Psyr_0990at 1120.666 kb on - strand, within Psyr_0990at 1120.666 kb on - strand, within Psyr_0990at 1120.710 kb on + strand, within Psyr_0990at 1120.710 kb on + strand, within Psyr_0990at 1120.711 kb on - strand, within Psyr_0990at 1120.711 kb on - strand, within Psyr_0990at 1120.711 kb on - strand, within Psyr_0990at 1120.711 kb on - strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.746 kb on + strand, within Psyr_0990at 1120.747 kb on - strand, within Psyr_0990at 1120.747 kb on - strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.842 kb on + strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.843 kb on - strand, within Psyr_0990at 1120.923 kb on + strand, within Psyr_0990at 1121.170 kb on + strand, within Psyr_0990at 1121.230 kb on - strand, within Psyr_0990at 1121.361 kb on + strand, within Psyr_0990at 1121.361 kb on + strand, within Psyr_0990at 1121.361 kb on + strand, within Psyr_0990at 1121.362 kb on - strand, within Psyr_0990at 1121.362 kb on - strand, within Psyr_0990at 1121.362 kb on - strand, within Psyr_0990at 1121.693 kb on + strandat 1121.693 kb on + strandat 1121.693 kb on + strandat 1121.693 kb on + strandat 1121.693 kb on + strandat 1121.693 kb on + strandat 1121.694 kb on - strandat 1121.694 kb on - strandat 1121.694 kb on - strandat 1121.694 kb on - strandat 1121.694 kb on - strandat 1121.694 kb on - strandat 1121.694 kb on - strandat 1121.694 kb on - strandat 1121.915 kb on - strandat 1122.007 kb on + strandat 1122.007 kb on + strandat 1122.008 kb on - strandat 1122.008 kb on - strandat 1122.029 kb on + strandat 1122.113 kb on + strandat 1122.119 kb on + strandat 1122.119 kb on + strandat 1122.120 kb on - strandat 1122.120 kb on - strandat 1122.441 kb on + strand, within Psyr_0991at 1122.442 kb on - strand, within Psyr_0991at 1122.442 kb on - strand, within Psyr_0991at 1122.474 kb on + strand, within Psyr_0991at 1122.475 kb on - strand, within Psyr_0991at 1122.475 kb on - strand, within Psyr_0991at 1122.475 kb on - strand, within Psyr_0991at 1122.475 kb on - strand, within Psyr_0991at 1122.588 kb on + strand, within Psyr_0991at 1122.589 kb on - strand, within Psyr_0991at 1122.597 kb on + strand, within Psyr_0991at 1122.597 kb on + strand, within Psyr_0991at 1122.597 kb on + strand, within Psyr_0991at 1122.598 kb on - strand, within Psyr_0991at 1122.598 kb on - strand, within Psyr_0991at 1122.662 kb on + strand, within Psyr_0991at 1122.662 kb on + strand, within Psyr_0991at 1122.663 kb on - strand, within Psyr_0991at 1122.663 kb on - strand, within Psyr_0991at 1122.663 kb on - strand, within Psyr_0991at 1122.663 kb on - strand, within Psyr_0991at 1122.768 kb on + strand, within Psyr_0991at 1122.768 kb on + strand, within Psyr_0991at 1122.768 kb on + strand, within Psyr_0991at 1122.768 kb on + strand, within Psyr_0991at 1122.768 kb on + strand, within Psyr_0991at 1122.769 kb on - strand, within Psyr_0991at 1122.769 kb on - strand, within Psyr_0991at 1122.769 kb on - strand, within Psyr_0991at 1122.813 kb on + strand, within Psyr_0991at 1122.814 kb on - strand, within Psyr_0991at 1122.814 kb on - strand, within Psyr_0991

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Matrine 10 mM
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1,119,244 + +0.4
1,119,244 + +1.5
1,119,245 - +1.9
1,119,248 + +0.4
1,119,248 + +0.1
1,119,248 + +1.4
1,119,248 + +1.6
1,119,248 + -0.4
1,119,249 - +1.0
1,119,306 + +0.6
1,119,306 + +0.3
1,119,350 + +0.2
1,119,351 - -0.7
1,119,351 - -0.2
1,119,351 - -0.3
1,119,351 - +0.6
1,119,591 - Psyr_0989 0.39 -0.6
1,119,594 + Psyr_0989 0.39 +0.5
1,119,594 + Psyr_0989 0.39 +0.4
1,119,594 + Psyr_0989 0.39 +1.1
1,119,594 + Psyr_0989 0.39 +0.3
1,119,594 + Psyr_0989 0.39 +0.1
1,119,594 + Psyr_0989 0.39 +1.0
1,119,595 - Psyr_0989 0.39 -1.1
1,119,595 - Psyr_0989 0.39 +0.1
1,119,595 - Psyr_0989 0.39 +0.1
1,119,595 - Psyr_0989 0.39 +0.1
1,119,595 - Psyr_0989 0.39 -0.6
1,119,595 - Psyr_0989 0.39 +1.2
1,119,595 - Psyr_0989 0.39 +0.6
1,119,595 - Psyr_0989 0.39 -0.5
1,119,595 - Psyr_0989 0.39 -0.8
1,119,595 - Psyr_0989 0.39 -1.1
1,119,595 - Psyr_0989 0.39 +0.7
1,119,599 + Psyr_0989 0.40 -1.6
1,119,599 + Psyr_0989 0.40 +0.1
1,119,599 + Psyr_0989 0.40 -1.3
1,119,600 - Psyr_0989 0.40 -0.4
1,119,600 - Psyr_0989 0.40 +0.1
1,119,600 - Psyr_0989 0.40 -0.3
1,119,600 - Psyr_0989 0.40 -0.3
1,119,600 - Psyr_0989 0.40 +0.4
1,119,600 - Psyr_0989 0.40 -0.8
1,119,600 - Psyr_0989 0.40 -0.3
1,119,695 + +0.2
1,119,695 + Psyr_0989 0.55 -1.6
1,119,695 + Psyr_0989 0.55 +0.0
1,119,696 - Psyr_0989 0.55 +0.8
1,119,696 - Psyr_0989 0.55 -1.1
1,119,696 - Psyr_0989 0.55 -0.8
1,119,696 - Psyr_0989 0.55 -0.4
1,119,696 - Psyr_0989 0.55 -0.5
1,119,815 + Psyr_0989 0.74 +0.7
1,120,109 + +0.7
1,120,110 - -1.2
1,120,110 - -0.5
1,120,110 - -0.1
1,120,148 + -0.2
1,120,148 + -0.2
1,120,148 + +0.2
1,120,148 + +1.1
1,120,148 + +1.4
1,120,149 - +1.2
1,120,149 - -0.3
1,120,149 - +0.1
1,120,149 - -0.1
1,120,149 - -0.6
1,120,149 - -0.3
1,120,149 - +0.2
1,120,149 - +0.1
1,120,260 + -0.6
1,120,260 + -0.8
1,120,260 + -0.1
1,120,261 - +0.2
1,120,278 + +2.6
1,120,284 + -0.4
1,120,285 - -0.8
1,120,306 + +0.1
1,120,306 + +0.1
1,120,307 - -0.3
1,120,324 + Psyr_0990 0.10 +0.2
1,120,324 + Psyr_0990 0.10 +0.2
1,120,324 + Psyr_0990 0.10 -0.2
1,120,389 + Psyr_0990 0.14 +0.1
1,120,533 + Psyr_0990 0.23 +0.5
1,120,533 + Psyr_0990 0.23 -0.8
1,120,533 + Psyr_0990 0.23 +0.6
1,120,534 - Psyr_0990 0.23 +1.2
1,120,534 - Psyr_0990 0.23 -2.1
1,120,621 + Psyr_0990 0.28 +0.2
1,120,621 + Psyr_0990 0.28 +1.9
1,120,622 - Psyr_0990 0.28 -0.6
1,120,622 - Psyr_0990 0.28 +1.6
1,120,622 - Psyr_0990 0.28 -1.0
1,120,632 + Psyr_0990 0.29 +0.7
1,120,633 - Psyr_0990 0.29 -0.2
1,120,633 - Psyr_0990 0.29 +0.1
1,120,665 + Psyr_0990 0.31 -0.3
1,120,666 - Psyr_0990 0.31 +0.6
1,120,666 - Psyr_0990 0.31 +0.7
1,120,710 + Psyr_0990 0.33 -1.0
1,120,710 + Psyr_0990 0.33 -1.8
1,120,711 - Psyr_0990 0.33 -0.2
1,120,711 - Psyr_0990 0.33 +0.9
1,120,711 - Psyr_0990 0.33 +0.5
1,120,711 - Psyr_0990 0.33 +0.7
1,120,746 + Psyr_0990 0.35 +1.0
1,120,746 + Psyr_0990 0.35 +0.0
1,120,746 + Psyr_0990 0.35 -0.0
1,120,746 + Psyr_0990 0.35 -0.1
1,120,746 + Psyr_0990 0.35 +1.2
1,120,746 + Psyr_0990 0.35 +0.5
1,120,747 - Psyr_0990 0.36 +1.2
1,120,747 - Psyr_0990 0.36 +1.0
1,120,842 + Psyr_0990 0.41 -0.7
1,120,842 + Psyr_0990 0.41 +1.0
1,120,842 + Psyr_0990 0.41 +0.6
1,120,842 + Psyr_0990 0.41 +0.6
1,120,842 + Psyr_0990 0.41 -0.2
1,120,842 + Psyr_0990 0.41 -1.4
1,120,843 - Psyr_0990 0.41 -0.1
1,120,843 - Psyr_0990 0.41 -0.2
1,120,843 - Psyr_0990 0.41 -0.5
1,120,843 - Psyr_0990 0.41 +0.6
1,120,843 - Psyr_0990 0.41 +0.4
1,120,843 - Psyr_0990 0.41 -0.7
1,120,843 - Psyr_0990 0.41 +0.4
1,120,843 - Psyr_0990 0.41 -0.4
1,120,923 + Psyr_0990 0.46 -0.3
1,121,170 + Psyr_0990 0.61 +0.6
1,121,230 - Psyr_0990 0.64 +1.3
1,121,361 + Psyr_0990 0.72 +1.3
1,121,361 + Psyr_0990 0.72 +0.5
1,121,361 + Psyr_0990 0.72 -0.1
1,121,362 - Psyr_0990 0.72 -1.0
1,121,362 - Psyr_0990 0.72 +0.8
1,121,362 - Psyr_0990 0.72 -0.4
1,121,693 + +0.2
1,121,693 + +0.2
1,121,693 + -0.1
1,121,693 + +0.5
1,121,693 + -0.8
1,121,693 + -0.4
1,121,694 - -0.5
1,121,694 - +1.2
1,121,694 - +1.2
1,121,694 - -0.6
1,121,694 - -0.6
1,121,694 - +0.1
1,121,694 - -0.1
1,121,694 - +0.6
1,121,915 - -0.3
1,122,007 + -0.8
1,122,007 + -0.5
1,122,008 - +0.3
1,122,008 - +0.2
1,122,029 + +0.4
1,122,113 + +0.1
1,122,119 + -0.1
1,122,119 + +1.2
1,122,120 - -0.0
1,122,120 - +0.8
1,122,441 + Psyr_0991 0.15 -1.2
1,122,442 - Psyr_0991 0.16 -0.9
1,122,442 - Psyr_0991 0.16 -0.8
1,122,474 + Psyr_0991 0.17 +0.6
1,122,475 - Psyr_0991 0.17 -0.3
1,122,475 - Psyr_0991 0.17 -2.3
1,122,475 - Psyr_0991 0.17 +0.1
1,122,475 - Psyr_0991 0.17 -0.4
1,122,588 + Psyr_0991 0.23 -1.1
1,122,589 - Psyr_0991 0.23 -0.8
1,122,597 + Psyr_0991 0.24 +0.9
1,122,597 + Psyr_0991 0.24 +0.9
1,122,597 + Psyr_0991 0.24 +0.2
1,122,598 - Psyr_0991 0.24 +1.0
1,122,598 - Psyr_0991 0.24 -0.4
1,122,662 + Psyr_0991 0.27 -0.1
1,122,662 + Psyr_0991 0.27 -1.0
1,122,663 - Psyr_0991 0.27 -0.6
1,122,663 - Psyr_0991 0.27 +0.4
1,122,663 - Psyr_0991 0.27 +0.6
1,122,663 - Psyr_0991 0.27 -1.0
1,122,768 + Psyr_0991 0.32 -0.0
1,122,768 + Psyr_0991 0.32 +0.2
1,122,768 + Psyr_0991 0.32 -1.0
1,122,768 + Psyr_0991 0.32 -1.4
1,122,768 + Psyr_0991 0.32 -0.8
1,122,769 - Psyr_0991 0.32 -0.0
1,122,769 - Psyr_0991 0.32 +1.4
1,122,769 - Psyr_0991 0.32 -1.8
1,122,813 + Psyr_0991 0.35 +0.6
1,122,814 - Psyr_0991 0.35 -0.7
1,122,814 - Psyr_0991 0.35 +0.7

Or see this region's nucleotide sequence