Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0706

Experiment: KB with Matrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0704 and Psyr_0705 are separated by 25 nucleotidesPsyr_0705 and Psyr_0706 are separated by 468 nucleotidesPsyr_0706 and Psyr_0707 are separated by 293 nucleotidesPsyr_0707 and Psyr_0708 are separated by 202 nucleotides Psyr_0704: Psyr_0704 - glutamate 5-kinase, at 806,935 to 808,053 _0704 Psyr_0705: Psyr_0705 - CreA, at 808,079 to 808,549 _0705 Psyr_0706: Psyr_0706 - Acyltransferase 3, at 809,018 to 810,079 _0706 Psyr_0707: Psyr_0707 - SSU ribosomal protein S20P, at 810,373 to 810,651 _0707 Psyr_0708: Psyr_0708 - Virulence factor MVIN-like protein, at 810,854 to 812,440 _0708 Position (kb) 809 810 811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 808.099 kb on - strandat 808.241 kb on + strand, within Psyr_0705at 808.241 kb on + strand, within Psyr_0705at 808.241 kb on + strand, within Psyr_0705at 808.241 kb on + strand, within Psyr_0705at 808.242 kb on - strand, within Psyr_0705at 808.242 kb on - strand, within Psyr_0705at 808.242 kb on - strand, within Psyr_0705at 808.387 kb on + strand, within Psyr_0705at 808.388 kb on - strand, within Psyr_0705at 808.454 kb on + strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.455 kb on - strand, within Psyr_0705at 808.463 kb on + strand, within Psyr_0705at 808.464 kb on - strand, within Psyr_0705at 808.486 kb on + strand, within Psyr_0705at 808.637 kb on + strandat 808.637 kb on + strandat 808.637 kb on + strandat 808.637 kb on + strandat 808.637 kb on + strandat 808.638 kb on - strandat 808.638 kb on - strandat 808.638 kb on - strandat 808.638 kb on - strandat 808.638 kb on - strandat 808.655 kb on + strandat 808.675 kb on + strandat 808.753 kb on + strandat 808.753 kb on + strandat 808.819 kb on + strandat 808.820 kb on - strandat 808.864 kb on + strandat 808.864 kb on + strandat 808.877 kb on - strandat 808.918 kb on + strandat 808.919 kb on - strandat 808.919 kb on - strandat 808.922 kb on - strandat 808.948 kb on - strandat 808.948 kb on - strandat 808.950 kb on + strandat 808.951 kb on - strandat 808.951 kb on - strandat 808.951 kb on - strandat 808.951 kb on - strandat 808.954 kb on + strandat 809.039 kb on + strandat 809.039 kb on + strandat 809.040 kb on - strandat 809.061 kb on + strandat 809.061 kb on + strandat 809.062 kb on - strandat 809.062 kb on - strandat 809.080 kb on + strandat 809.116 kb on + strandat 809.116 kb on + strandat 809.116 kb on + strandat 809.116 kb on + strandat 809.116 kb on + strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.117 kb on - strandat 809.118 kb on + strandat 809.118 kb on + strandat 809.118 kb on + strandat 809.119 kb on - strandat 809.119 kb on - strandat 809.155 kb on - strand, within Psyr_0706at 809.155 kb on - strand, within Psyr_0706at 809.184 kb on - strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.233 kb on + strand, within Psyr_0706at 809.234 kb on - strand, within Psyr_0706at 809.234 kb on - strand, within Psyr_0706at 809.236 kb on - strand, within Psyr_0706at 809.310 kb on + strand, within Psyr_0706at 809.311 kb on - strand, within Psyr_0706at 809.311 kb on - strand, within Psyr_0706at 809.311 kb on - strand, within Psyr_0706at 809.311 kb on - strand, within Psyr_0706at 809.321 kb on + strand, within Psyr_0706at 809.339 kb on + strand, within Psyr_0706at 809.339 kb on + strand, within Psyr_0706at 809.340 kb on - strand, within Psyr_0706at 809.341 kb on + strand, within Psyr_0706at 809.341 kb on + strand, within Psyr_0706at 809.342 kb on - strand, within Psyr_0706at 809.399 kb on + strand, within Psyr_0706at 809.399 kb on + strand, within Psyr_0706at 809.399 kb on + strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.400 kb on - strand, within Psyr_0706at 809.414 kb on + strand, within Psyr_0706at 809.415 kb on - strand, within Psyr_0706at 809.415 kb on - strand, within Psyr_0706at 809.421 kb on + strand, within Psyr_0706at 809.421 kb on + strand, within Psyr_0706at 809.421 kb on + strand, within Psyr_0706at 809.421 kb on + strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.422 kb on - strand, within Psyr_0706at 809.428 kb on + strand, within Psyr_0706at 809.428 kb on + strand, within Psyr_0706at 809.428 kb on + strand, within Psyr_0706at 809.429 kb on - strand, within Psyr_0706at 809.462 kb on + strand, within Psyr_0706at 809.462 kb on + strand, within Psyr_0706at 809.462 kb on + strand, within Psyr_0706at 809.463 kb on - strand, within Psyr_0706at 809.463 kb on - strand, within Psyr_0706at 809.511 kb on - strand, within Psyr_0706at 809.511 kb on - strand, within Psyr_0706at 809.513 kb on + strand, within Psyr_0706at 809.513 kb on + strand, within Psyr_0706at 809.513 kb on + strand, within Psyr_0706at 809.514 kb on - strand, within Psyr_0706at 809.514 kb on - strand, within Psyr_0706at 809.514 kb on - strand, within Psyr_0706at 809.571 kb on + strand, within Psyr_0706at 809.571 kb on + strand, within Psyr_0706at 809.588 kb on - strand, within Psyr_0706at 809.594 kb on - strand, within Psyr_0706at 809.594 kb on - strand, within Psyr_0706at 809.596 kb on + strand, within Psyr_0706at 809.596 kb on + strand, within Psyr_0706at 809.603 kb on - strand, within Psyr_0706at 809.646 kb on + strand, within Psyr_0706at 809.647 kb on - strand, within Psyr_0706at 809.695 kb on + strand, within Psyr_0706at 809.696 kb on - strand, within Psyr_0706at 809.724 kb on + strand, within Psyr_0706at 809.724 kb on + strand, within Psyr_0706at 809.724 kb on + strand, within Psyr_0706at 809.725 kb on - strand, within Psyr_0706at 809.725 kb on - strand, within Psyr_0706at 809.788 kb on + strand, within Psyr_0706at 809.788 kb on + strand, within Psyr_0706at 809.863 kb on + strand, within Psyr_0706at 810.060 kb on + strandat 810.061 kb on - strandat 810.107 kb on + strandat 810.108 kb on - strandat 810.113 kb on + strandat 810.114 kb on - strandat 810.118 kb on + strandat 810.119 kb on - strandat 810.330 kb on + strandat 810.740 kb on - strandat 810.764 kb on - strandat 810.764 kb on - strandat 810.783 kb on - strandat 810.783 kb on - strandat 810.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Matrine 10 mM
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808,099 - +0.3
808,241 + Psyr_0705 0.34 -0.1
808,241 + Psyr_0705 0.34 -1.5
808,241 + Psyr_0705 0.34 -0.1
808,241 + Psyr_0705 0.34 -0.2
808,242 - Psyr_0705 0.35 +0.5
808,242 - Psyr_0705 0.35 -0.1
808,242 - Psyr_0705 0.35 +0.3
808,387 + Psyr_0705 0.65 +1.5
808,388 - Psyr_0705 0.66 -1.0
808,454 + Psyr_0705 0.80 +0.2
808,455 - Psyr_0705 0.80 +0.9
808,455 - Psyr_0705 0.80 -0.1
808,455 - Psyr_0705 0.80 -1.7
808,455 - Psyr_0705 0.80 -3.0
808,455 - Psyr_0705 0.80 +1.2
808,455 - Psyr_0705 0.80 -1.0
808,455 - Psyr_0705 0.80 -0.1
808,463 + Psyr_0705 0.82 -0.7
808,464 - Psyr_0705 0.82 +0.6
808,486 + Psyr_0705 0.86 +1.8
808,637 + -0.1
808,637 + +0.8
808,637 + +0.8
808,637 + +0.8
808,637 + +0.2
808,638 - +0.4
808,638 - +0.9
808,638 - +0.7
808,638 - -0.0
808,638 - -0.4
808,655 + -1.4
808,675 + -0.1
808,753 + -0.8
808,753 + -0.8
808,819 + +0.8
808,820 - +1.0
808,864 + +0.5
808,864 + -0.2
808,877 - -0.4
808,918 + -0.5
808,919 - -0.4
808,919 - +0.4
808,922 - -0.1
808,948 - -0.3
808,948 - -1.6
808,950 + +1.6
808,951 - +0.2
808,951 - -0.2
808,951 - +0.9
808,951 - +0.1
808,954 + -1.5
809,039 + -0.2
809,039 + -0.5
809,040 - -0.9
809,061 + +0.0
809,061 + +0.4
809,062 - +0.2
809,062 - -1.4
809,080 + -0.8
809,116 + -1.0
809,116 + -0.3
809,116 + -0.4
809,116 + -0.0
809,116 + +1.2
809,117 - +3.0
809,117 - +0.4
809,117 - +0.5
809,117 - -1.4
809,117 - +0.0
809,117 - -1.5
809,118 + -0.1
809,118 + -1.0
809,118 + -0.0
809,119 - -0.9
809,119 - +0.0
809,155 - Psyr_0706 0.13 -0.9
809,155 - Psyr_0706 0.13 -1.7
809,184 - Psyr_0706 0.16 -0.5
809,233 + Psyr_0706 0.20 -0.9
809,233 + Psyr_0706 0.20 -2.1
809,233 + Psyr_0706 0.20 -0.2
809,233 + Psyr_0706 0.20 +0.5
809,233 + Psyr_0706 0.20 +0.7
809,233 + Psyr_0706 0.20 +1.2
809,233 + Psyr_0706 0.20 -0.7
809,234 - Psyr_0706 0.20 +0.1
809,234 - Psyr_0706 0.20 +0.7
809,236 - Psyr_0706 0.21 -1.1
809,310 + Psyr_0706 0.27 -0.4
809,311 - Psyr_0706 0.28 -0.1
809,311 - Psyr_0706 0.28 -0.1
809,311 - Psyr_0706 0.28 -1.7
809,311 - Psyr_0706 0.28 -0.1
809,321 + Psyr_0706 0.29 -1.5
809,339 + Psyr_0706 0.30 -1.1
809,339 + Psyr_0706 0.30 +0.2
809,340 - Psyr_0706 0.30 -0.7
809,341 + Psyr_0706 0.30 +0.5
809,341 + Psyr_0706 0.30 -0.2
809,342 - Psyr_0706 0.31 -0.6
809,399 + Psyr_0706 0.36 -0.3
809,399 + Psyr_0706 0.36 -0.3
809,399 + Psyr_0706 0.36 -1.6
809,400 - Psyr_0706 0.36 -0.8
809,400 - Psyr_0706 0.36 +0.4
809,400 - Psyr_0706 0.36 +0.6
809,400 - Psyr_0706 0.36 +0.6
809,400 - Psyr_0706 0.36 -0.2
809,400 - Psyr_0706 0.36 -0.5
809,400 - Psyr_0706 0.36 -0.5
809,400 - Psyr_0706 0.36 -2.1
809,414 + Psyr_0706 0.37 -1.9
809,415 - Psyr_0706 0.37 -1.6
809,415 - Psyr_0706 0.37 -2.9
809,421 + Psyr_0706 0.38 -1.0
809,421 + Psyr_0706 0.38 -0.8
809,421 + Psyr_0706 0.38 +0.2
809,421 + Psyr_0706 0.38 -0.4
809,422 - Psyr_0706 0.38 -1.3
809,422 - Psyr_0706 0.38 +0.7
809,422 - Psyr_0706 0.38 +0.1
809,422 - Psyr_0706 0.38 -0.9
809,422 - Psyr_0706 0.38 -0.3
809,422 - Psyr_0706 0.38 +0.2
809,428 + Psyr_0706 0.39 -1.4
809,428 + Psyr_0706 0.39 +0.2
809,428 + Psyr_0706 0.39 +0.5
809,429 - Psyr_0706 0.39 -1.9
809,462 + Psyr_0706 0.42 +2.1
809,462 + Psyr_0706 0.42 +0.9
809,462 + Psyr_0706 0.42 -0.1
809,463 - Psyr_0706 0.42 +0.3
809,463 - Psyr_0706 0.42 -1.9
809,511 - Psyr_0706 0.46 -0.0
809,511 - Psyr_0706 0.46 -0.8
809,513 + Psyr_0706 0.47 -0.2
809,513 + Psyr_0706 0.47 -0.5
809,513 + Psyr_0706 0.47 -0.6
809,514 - Psyr_0706 0.47 -2.6
809,514 - Psyr_0706 0.47 +3.5
809,514 - Psyr_0706 0.47 -1.0
809,571 + Psyr_0706 0.52 +0.4
809,571 + Psyr_0706 0.52 -0.7
809,588 - Psyr_0706 0.54 +0.3
809,594 - Psyr_0706 0.54 -0.6
809,594 - Psyr_0706 0.54 -0.0
809,596 + Psyr_0706 0.54 -1.5
809,596 + Psyr_0706 0.54 -0.6
809,603 - Psyr_0706 0.55 -0.9
809,646 + Psyr_0706 0.59 +0.7
809,647 - Psyr_0706 0.59 +0.6
809,695 + Psyr_0706 0.64 -0.4
809,696 - Psyr_0706 0.64 +1.0
809,724 + Psyr_0706 0.66 -1.8
809,724 + Psyr_0706 0.66 -0.9
809,724 + Psyr_0706 0.66 +0.2
809,725 - Psyr_0706 0.67 -0.7
809,725 - Psyr_0706 0.67 -0.9
809,788 + Psyr_0706 0.73 -1.0
809,788 + Psyr_0706 0.73 -1.5
809,863 + Psyr_0706 0.80 +0.2
810,060 + +0.4
810,061 - +1.6
810,107 + +0.2
810,108 - -0.2
810,113 + -0.5
810,114 - +0.2
810,118 + +1.2
810,119 - +0.3
810,330 + -1.1
810,740 - -0.0
810,764 - -0.8
810,764 - -0.1
810,783 - +2.8
810,783 - -0.5
810,803 - +0.4

Or see this region's nucleotide sequence