Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0140

Experiment: KB with Matrine 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Matrine 10 mM
150,525	+		Psyr_0139	0.57	+0.8
150,526	-		Psyr_0139	0.57	+1.6
150,526	-		Psyr_0139	0.57	+1.0
150,543	+		Psyr_0139	0.58	+0.4
150,543	+		Psyr_0139	0.58	+0.3
150,543	+		Psyr_0139	0.58	-0.1
150,543	+		Psyr_0139	0.58	+0.6
150,543	+		Psyr_0139	0.58	-0.3
150,543	+		Psyr_0139	0.58	-0.8
150,543	+		Psyr_0139	0.58	+1.0
150,543	+		Psyr_0139	0.58	-2.1
150,543	+		Psyr_0139	0.58	+2.3
150,544	-		Psyr_0139	0.58	-0.1
150,544	-		Psyr_0139	0.58	+0.7
150,544	-		Psyr_0139	0.58	-0.5
150,544	-		Psyr_0139	0.58	-0.0
150,544	-		Psyr_0139	0.58	+0.1
150,544	-		Psyr_0139	0.58	+0.6
150,651	+		Psyr_0139	0.63	+0.1
150,652	-		Psyr_0139	0.63	-1.1
150,894	+		Psyr_0139	0.76	-1.1
150,894	+		Psyr_0139	0.76	+0.3
150,894	+		Psyr_0139	0.76	-1.1
150,894	+		Psyr_0139	0.76	+0.9
150,895	-		Psyr_0139	0.76	-0.5
150,895	-		Psyr_0139	0.76	+0.3
150,895	-		Psyr_0139	0.76	-1.1
150,895	-		Psyr_0139	0.76	-0.9
150,921	+		Psyr_0139	0.78	+0.8
150,987	+		Psyr_0139	0.81	+3.0
150,987	+		Psyr_0139	0.81	+1.4
150,987	+		Psyr_0139	0.81	-0.8
150,988	-		Psyr_0139	0.81	+0.7
150,988	-		Psyr_0139	0.81	-0.1
150,988	-		Psyr_0139	0.81	-0.1
150,988	-		Psyr_0139	0.81	+0.4
150,988	-		Psyr_0139	0.81	-0.3
150,988	-		Psyr_0139	0.81	+0.4
150,996	+		Psyr_0139	0.82	-0.4
151,117	-		Psyr_0139	0.88	+0.9
151,152	+				+0.2
151,155	+				-0.2
151,155	+				-0.9
151,155	+				-0.1
151,155	+				+0.4
151,155	+				+0.3
151,155	+				+0.4
151,155	+				-2.2
151,155	+				-2.1
151,155	+				+0.0
151,155	+				-0.8
151,155	+				+0.3
151,155	+				-1.3
151,155	+				+0.7
151,155	+				-0.7
151,155	+				+1.2
151,155	+				-0.7
151,155	+				-0.4
151,156	-				+1.7
151,156	-				-0.4
151,156	-				+0.7
151,156	-				-0.5
151,156	-				+0.1
151,156	-				+0.3
151,156	-				-0.2
151,156	-				-0.4
151,156	-				-0.0
151,156	-				-0.4
151,156	-				-0.1
151,156	-				+0.5
151,156	-				-0.3
151,156	-				-0.1
151,156	-				+1.2
151,156	-				-0.4
151,156	-				+0.2
151,156	-				-1.6
151,156	-				-0.5
151,156	-				+1.1
151,156	-				+0.2
151,156	-				-0.6
151,156	-				+0.1
151,170	+				+0.2
151,170	+				-0.4
151,170	+				+0.9
151,170	+				-0.3
151,170	+				-1.1
151,170	+				-0.4
151,170	+				-0.7
151,170	+				+1.4
151,171	-				-0.5
151,171	-				-0.1
151,171	-				-1.1
151,171	-				+0.6
151,171	-				+0.5
151,171	-				-0.6
151,171	-				+0.1
151,171	-				+0.9
151,173	+				+0.3
151,236	+				-0.2
151,236	+				-0.1
151,236	+				-0.5
151,236	+				-0.5
151,237	-				-0.1
151,336	-				+0.1
151,336	-				-1.2
151,351	+				-0.3
151,351	+				+0.6
151,352	-				-2.1
151,352	-				+0.0
151,585	+		Psyr_0140	0.23	-0.3
151,586	-		Psyr_0140	0.23	+0.9
151,636	+		Psyr_0140	0.28	+0.6
151,636	+		Psyr_0140	0.28	-0.0
151,637	-		Psyr_0140	0.28	+0.1
151,750	+		Psyr_0140	0.38	-0.1
151,900	+		Psyr_0140	0.52	+0.9
151,900	+		Psyr_0140	0.52	+0.8
151,900	+		Psyr_0140	0.52	+0.4
151,900	+		Psyr_0140	0.52	+0.3
151,900	+		Psyr_0140	0.52	+0.8
151,900	+		Psyr_0140	0.52	-0.1
151,901	-		Psyr_0140	0.52	+1.1
151,901	-		Psyr_0140	0.52	+0.7
151,978	+		Psyr_0140	0.60	+0.0
151,978	+		Psyr_0140	0.60	-0.3
151,978	+		Psyr_0140	0.60	-0.4
151,978	+		Psyr_0140	0.60	-0.8
151,979	-		Psyr_0140	0.60	-2.1
151,979	-		Psyr_0140	0.60	+0.1
152,083	+		Psyr_0140	0.69	+0.5
152,131	+		Psyr_0140	0.74	+0.8
152,256	+		Psyr_0140	0.86	+0.0
152,256	+		Psyr_0140	0.86	+1.4
152,257	-		Psyr_0140	0.86	+0.3
152,362	+				-0.3
152,363	-				-0.5
152,363	-				+0.5
152,574	+		Psyr_0141	0.16	-0.3
152,574	+		Psyr_0141	0.16	+0.2
152,574	+		Psyr_0141	0.16	-0.0
152,574	+		Psyr_0141	0.16	+0.9
152,574	+		Psyr_0141	0.16	+1.4
152,574	+		Psyr_0141	0.16	+0.1
152,574	+		Psyr_0141	0.16	+0.3
152,574	+		Psyr_0141	0.16	+0.1
152,575	-		Psyr_0141	0.16	+1.2
152,575	-		Psyr_0141	0.16	-0.2
152,575	-		Psyr_0141	0.16	-0.1
152,575	-		Psyr_0141	0.16	-1.1
152,575	-		Psyr_0141	0.16	-0.6
152,595	+		Psyr_0141	0.18	-0.9
152,595	+		Psyr_0141	0.18	+0.0
152,595	+		Psyr_0141	0.18	+0.3
152,595	+		Psyr_0141	0.18	+0.1
152,595	+		Psyr_0141	0.18	+0.5
152,595	+		Psyr_0141	0.18	-1.2
152,595	+		Psyr_0141	0.18	+1.9
152,595	+		Psyr_0141	0.18	+0.3
152,595	+		Psyr_0141	0.18	+0.0
152,596	-		Psyr_0141	0.18	-1.2
152,596	-		Psyr_0141	0.18	+0.9
152,596	-		Psyr_0141	0.18	+0.6
152,596	-		Psyr_0141	0.18	-0.6
152,596	-		Psyr_0141	0.18	+0.0
152,596	-		Psyr_0141	0.18	-0.3
152,596	-		Psyr_0141	0.18	-0.3
152,596	-		Psyr_0141	0.18	-0.6
152,596	-		Psyr_0141	0.18	-0.2
152,596	-		Psyr_0141	0.18	+0.9
152,596	-		Psyr_0141	0.18	-1.5
152,640	+		Psyr_0141	0.23	+0.7
152,641	-		Psyr_0141	0.23	+0.2
152,652	+		Psyr_0141	0.24	-0.7
152,652	+		Psyr_0141	0.24	-0.8
152,653	-		Psyr_0141	0.24	-1.0
152,653	-		Psyr_0141	0.24	-0.2
152,653	-		Psyr_0141	0.24	-0.0
152,653	-		Psyr_0141	0.24	+0.1
152,653	-		Psyr_0141	0.24	+0.1
152,716	-		Psyr_0141	0.30	+0.5
152,730	+		Psyr_0141	0.31	+1.0
152,730	+		Psyr_0141	0.31	-0.3
152,730	+		Psyr_0141	0.31	+0.5
152,730	+		Psyr_0141	0.31	+0.9
152,730	+		Psyr_0141	0.31	-0.1
152,730	+		Psyr_0141	0.31	+0.1
152,730	+		Psyr_0141	0.31	-0.1
152,731	-		Psyr_0141	0.31	+0.4
152,911	-		Psyr_0141	0.49	+0.1
152,979	+		Psyr_0141	0.56	+0.7
152,979	+		Psyr_0141	0.56	-0.7
152,980	-		Psyr_0141	0.56	+0.4
152,980	-		Psyr_0141	0.56	+0.1
153,111	+		Psyr_0141	0.69	-0.5
153,111	+		Psyr_0141	0.69	+2.0
153,112	-		Psyr_0141	0.69	+0.2
153,112	-		Psyr_0141	0.69	-0.8
153,112	-		Psyr_0141	0.69	-0.4
153,112	-		Psyr_0141	0.69	+0.3
153,112	-		Psyr_0141	0.69	+0.7
153,112	-		Psyr_0141	0.69	-0.2
153,201	+		Psyr_0141	0.77	-0.6
153,201	+		Psyr_0141	0.77	-0.4
153,201	+		Psyr_0141	0.77	-0.5
153,202	-		Psyr_0141	0.78	+0.2
153,202	-		Psyr_0141	0.78	+0.8