Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27905

Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27900 and BWI76_RS27905 are separated by 138 nucleotidesBWI76_RS27905 and BWI76_RS27910 are separated by 118 nucleotidesBWI76_RS27910 and BWI76_RS27915 are separated by 367 nucleotides BWI76_RS27900: BWI76_RS27900 - DNA damage-inducible protein D, at 5,787,280 to 5,788,106 _RS27900 BWI76_RS27905: BWI76_RS27905 - heat-shock protein IbpB, at 5,788,245 to 5,788,673 _RS27905 BWI76_RS27910: BWI76_RS27910 - heat-shock protein IbpA, at 5,788,792 to 5,789,205 _RS27910 BWI76_RS27915: BWI76_RS27915 - YceK/YidQ family lipoprotein, at 5,789,573 to 5,789,905 _RS27915 Position (kb) 5788 5789Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5787.258 kb on - strandat 5787.454 kb on - strand, within BWI76_RS27900at 5787.480 kb on - strand, within BWI76_RS27900at 5787.655 kb on - strand, within BWI76_RS27900at 5787.845 kb on - strand, within BWI76_RS27900at 5787.854 kb on + strand, within BWI76_RS27900at 5787.871 kb on - strand, within BWI76_RS27900at 5787.918 kb on - strand, within BWI76_RS27900at 5787.924 kb on + strand, within BWI76_RS27900at 5787.950 kb on + strand, within BWI76_RS27900at 5788.015 kb on + strand, within BWI76_RS27900at 5788.042 kb on + strandat 5788.050 kb on - strandat 5788.180 kb on + strandat 5788.399 kb on - strand, within BWI76_RS27905at 5788.421 kb on - strand, within BWI76_RS27905at 5788.531 kb on - strand, within BWI76_RS27905at 5788.531 kb on - strand, within BWI76_RS27905at 5788.566 kb on + strand, within BWI76_RS27905at 5788.666 kb on - strandat 5788.675 kb on + strandat 5788.714 kb on - strandat 5788.846 kb on + strand, within BWI76_RS27910at 5788.850 kb on + strand, within BWI76_RS27910at 5788.850 kb on + strand, within BWI76_RS27910at 5788.850 kb on + strand, within BWI76_RS27910at 5788.850 kb on + strand, within BWI76_RS27910at 5788.858 kb on - strand, within BWI76_RS27910at 5788.858 kb on - strand, within BWI76_RS27910at 5788.858 kb on - strand, within BWI76_RS27910at 5788.858 kb on - strand, within BWI76_RS27910at 5788.858 kb on - strand, within BWI76_RS27910at 5788.858 kb on - strand, within BWI76_RS27910at 5788.858 kb on - strand, within BWI76_RS27910at 5788.864 kb on + strand, within BWI76_RS27910at 5788.940 kb on + strand, within BWI76_RS27910at 5788.947 kb on - strand, within BWI76_RS27910at 5788.950 kb on + strand, within BWI76_RS27910at 5788.951 kb on - strand, within BWI76_RS27910at 5788.962 kb on + strand, within BWI76_RS27910at 5788.985 kb on + strand, within BWI76_RS27910at 5789.000 kb on + strand, within BWI76_RS27910at 5789.008 kb on - strand, within BWI76_RS27910at 5789.008 kb on - strand, within BWI76_RS27910at 5789.063 kb on + strand, within BWI76_RS27910at 5789.071 kb on - strand, within BWI76_RS27910at 5789.095 kb on + strand, within BWI76_RS27910at 5789.095 kb on + strand, within BWI76_RS27910at 5789.095 kb on + strand, within BWI76_RS27910at 5789.095 kb on + strand, within BWI76_RS27910at 5789.111 kb on + strand, within BWI76_RS27910at 5789.119 kb on - strand, within BWI76_RS27910at 5789.119 kb on - strand, within BWI76_RS27910at 5789.169 kb on - strandat 5789.207 kb on + strandat 5789.225 kb on - strandat 5789.238 kb on - strandat 5789.258 kb on + strandat 5789.258 kb on + strandat 5789.258 kb on + strandat 5789.323 kb on + strandat 5789.325 kb on - strandat 5789.331 kb on - strandat 5789.332 kb on - strandat 5789.332 kb on - strandat 5789.384 kb on + strandat 5789.387 kb on - strandat 5789.596 kb on - strandat 5789.600 kb on + strandat 5789.600 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
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5,787,258 - +0.3
5,787,454 - BWI76_RS27900 0.21 -2.2
5,787,480 - BWI76_RS27900 0.24 +0.6
5,787,655 - BWI76_RS27900 0.45 +1.6
5,787,845 - BWI76_RS27900 0.68 +0.1
5,787,854 + BWI76_RS27900 0.69 +0.4
5,787,871 - BWI76_RS27900 0.71 -0.7
5,787,918 - BWI76_RS27900 0.77 +0.6
5,787,924 + BWI76_RS27900 0.78 -0.8
5,787,950 + BWI76_RS27900 0.81 +2.0
5,788,015 + BWI76_RS27900 0.89 +1.6
5,788,042 + -0.8
5,788,050 - +0.1
5,788,180 + +0.1
5,788,399 - BWI76_RS27905 0.36 +3.1
5,788,421 - BWI76_RS27905 0.41 +0.4
5,788,531 - BWI76_RS27905 0.67 -0.8
5,788,531 - BWI76_RS27905 0.67 -0.0
5,788,566 + BWI76_RS27905 0.75 +4.5
5,788,666 - -2.6
5,788,675 + +2.3
5,788,714 - -0.6
5,788,846 + BWI76_RS27910 0.13 -0.5
5,788,850 + BWI76_RS27910 0.14 +1.6
5,788,850 + BWI76_RS27910 0.14 +0.0
5,788,850 + BWI76_RS27910 0.14 -0.7
5,788,850 + BWI76_RS27910 0.14 -0.7
5,788,858 - BWI76_RS27910 0.16 -0.4
5,788,858 - BWI76_RS27910 0.16 +0.6
5,788,858 - BWI76_RS27910 0.16 +0.2
5,788,858 - BWI76_RS27910 0.16 +0.1
5,788,858 - BWI76_RS27910 0.16 +0.3
5,788,858 - BWI76_RS27910 0.16 -0.0
5,788,858 - BWI76_RS27910 0.16 -1.7
5,788,864 + BWI76_RS27910 0.17 +1.4
5,788,940 + BWI76_RS27910 0.36 -0.0
5,788,947 - BWI76_RS27910 0.37 -1.2
5,788,950 + BWI76_RS27910 0.38 -1.1
5,788,951 - BWI76_RS27910 0.38 +1.6
5,788,962 + BWI76_RS27910 0.41 +0.4
5,788,985 + BWI76_RS27910 0.47 +2.2
5,789,000 + BWI76_RS27910 0.50 +0.1
5,789,008 - BWI76_RS27910 0.52 -0.8
5,789,008 - BWI76_RS27910 0.52 +1.0
5,789,063 + BWI76_RS27910 0.65 -0.4
5,789,071 - BWI76_RS27910 0.67 +0.3
5,789,095 + BWI76_RS27910 0.73 -1.7
5,789,095 + BWI76_RS27910 0.73 +0.2
5,789,095 + BWI76_RS27910 0.73 +0.1
5,789,095 + BWI76_RS27910 0.73 -0.7
5,789,111 + BWI76_RS27910 0.77 -1.4
5,789,119 - BWI76_RS27910 0.79 -0.6
5,789,119 - BWI76_RS27910 0.79 -1.6
5,789,169 - +0.5
5,789,207 + +0.8
5,789,225 - -0.1
5,789,238 - +0.5
5,789,258 + +1.1
5,789,258 + -0.4
5,789,258 + +1.2
5,789,323 + +0.8
5,789,325 - +0.1
5,789,331 - +0.1
5,789,332 - +1.6
5,789,332 - -0.0
5,789,384 + +0.5
5,789,387 - -0.7
5,789,596 - +0.1
5,789,600 + -0.8
5,789,600 + -0.3

Or see this region's nucleotide sequence