Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24870

Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24865 and BWI76_RS24870 are separated by 10 nucleotidesBWI76_RS24870 and BWI76_RS24875 are separated by 176 nucleotides BWI76_RS24865: BWI76_RS24865 - PTS family enzyme IIB'BC, fructose-specific, at 5,181,610 to 5,183,022 _RS24865 BWI76_RS24870: BWI76_RS24870 - phosphocarrier, HPr family protein, at 5,183,033 to 5,183,848 _RS24870 BWI76_RS24875: BWI76_RS24875 - tagatose-1,6-bisphosphate aldolase, at 5,184,025 to 5,185,296 _RS24875 Position (kb) 5183 5184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5182.034 kb on - strand, within BWI76_RS24865at 5182.047 kb on + strand, within BWI76_RS24865at 5182.061 kb on + strand, within BWI76_RS24865at 5182.063 kb on + strand, within BWI76_RS24865at 5182.067 kb on - strand, within BWI76_RS24865at 5182.069 kb on - strand, within BWI76_RS24865at 5182.071 kb on - strand, within BWI76_RS24865at 5182.072 kb on - strand, within BWI76_RS24865at 5182.072 kb on - strand, within BWI76_RS24865at 5182.075 kb on + strand, within BWI76_RS24865at 5182.077 kb on + strand, within BWI76_RS24865at 5182.080 kb on + strand, within BWI76_RS24865at 5182.085 kb on - strand, within BWI76_RS24865at 5182.088 kb on - strand, within BWI76_RS24865at 5182.107 kb on + strand, within BWI76_RS24865at 5182.115 kb on - strand, within BWI76_RS24865at 5182.139 kb on - strand, within BWI76_RS24865at 5182.144 kb on - strand, within BWI76_RS24865at 5182.157 kb on - strand, within BWI76_RS24865at 5182.161 kb on - strand, within BWI76_RS24865at 5182.179 kb on + strand, within BWI76_RS24865at 5182.183 kb on + strand, within BWI76_RS24865at 5182.193 kb on + strand, within BWI76_RS24865at 5182.198 kb on + strand, within BWI76_RS24865at 5182.202 kb on - strand, within BWI76_RS24865at 5182.206 kb on - strand, within BWI76_RS24865at 5182.206 kb on - strand, within BWI76_RS24865at 5182.217 kb on - strand, within BWI76_RS24865at 5182.219 kb on + strand, within BWI76_RS24865at 5182.220 kb on - strand, within BWI76_RS24865at 5182.225 kb on + strand, within BWI76_RS24865at 5182.226 kb on - strand, within BWI76_RS24865at 5182.235 kb on - strand, within BWI76_RS24865at 5182.240 kb on + strand, within BWI76_RS24865at 5182.248 kb on - strand, within BWI76_RS24865at 5182.259 kb on + strand, within BWI76_RS24865at 5182.312 kb on - strand, within BWI76_RS24865at 5182.349 kb on + strand, within BWI76_RS24865at 5182.350 kb on + strand, within BWI76_RS24865at 5182.358 kb on - strand, within BWI76_RS24865at 5182.410 kb on + strand, within BWI76_RS24865at 5182.464 kb on - strand, within BWI76_RS24865at 5182.464 kb on - strand, within BWI76_RS24865at 5182.505 kb on + strand, within BWI76_RS24865at 5182.506 kb on - strand, within BWI76_RS24865at 5182.513 kb on - strand, within BWI76_RS24865at 5182.625 kb on - strand, within BWI76_RS24865at 5182.688 kb on + strand, within BWI76_RS24865at 5182.751 kb on + strand, within BWI76_RS24865at 5182.756 kb on + strand, within BWI76_RS24865at 5182.861 kb on - strand, within BWI76_RS24865at 5182.905 kb on + strandat 5182.951 kb on + strandat 5182.969 kb on - strandat 5183.051 kb on - strandat 5183.116 kb on + strand, within BWI76_RS24870at 5183.124 kb on - strand, within BWI76_RS24870at 5183.363 kb on + strand, within BWI76_RS24870at 5183.364 kb on + strand, within BWI76_RS24870at 5183.372 kb on - strand, within BWI76_RS24870at 5183.389 kb on + strand, within BWI76_RS24870at 5183.423 kb on + strand, within BWI76_RS24870at 5183.489 kb on + strand, within BWI76_RS24870at 5183.514 kb on + strand, within BWI76_RS24870at 5183.538 kb on + strand, within BWI76_RS24870at 5183.670 kb on + strand, within BWI76_RS24870at 5183.954 kb on + strandat 5183.962 kb on - strandat 5183.962 kb on - strandat 5183.962 kb on - strandat 5184.138 kb on + strandat 5184.150 kb on + strandat 5184.266 kb on + strand, within BWI76_RS24875at 5184.295 kb on - strand, within BWI76_RS24875at 5184.400 kb on + strand, within BWI76_RS24875at 5184.410 kb on + strand, within BWI76_RS24875at 5184.510 kb on - strand, within BWI76_RS24875at 5184.588 kb on - strand, within BWI76_RS24875at 5184.658 kb on + strand, within BWI76_RS24875at 5184.708 kb on - strand, within BWI76_RS24875

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
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5,182,034 - BWI76_RS24865 0.30 +0.2
5,182,047 + BWI76_RS24865 0.31 +0.6
5,182,061 + BWI76_RS24865 0.32 +1.1
5,182,063 + BWI76_RS24865 0.32 -0.5
5,182,067 - BWI76_RS24865 0.32 +0.6
5,182,069 - BWI76_RS24865 0.32 -0.4
5,182,071 - BWI76_RS24865 0.33 +0.0
5,182,072 - BWI76_RS24865 0.33 +0.4
5,182,072 - BWI76_RS24865 0.33 +0.0
5,182,075 + BWI76_RS24865 0.33 +0.4
5,182,077 + BWI76_RS24865 0.33 +0.5
5,182,080 + BWI76_RS24865 0.33 +1.3
5,182,085 - BWI76_RS24865 0.34 +0.3
5,182,088 - BWI76_RS24865 0.34 -2.0
5,182,107 + BWI76_RS24865 0.35 -0.4
5,182,115 - BWI76_RS24865 0.36 -0.0
5,182,139 - BWI76_RS24865 0.37 -1.3
5,182,144 - BWI76_RS24865 0.38 +0.6
5,182,157 - BWI76_RS24865 0.39 +2.1
5,182,161 - BWI76_RS24865 0.39 +0.5
5,182,179 + BWI76_RS24865 0.40 -0.8
5,182,183 + BWI76_RS24865 0.41 -1.6
5,182,193 + BWI76_RS24865 0.41 -1.3
5,182,198 + BWI76_RS24865 0.42 -0.9
5,182,202 - BWI76_RS24865 0.42 +1.1
5,182,206 - BWI76_RS24865 0.42 -0.0
5,182,206 - BWI76_RS24865 0.42 +0.3
5,182,217 - BWI76_RS24865 0.43 -2.5
5,182,219 + BWI76_RS24865 0.43 -0.3
5,182,220 - BWI76_RS24865 0.43 +0.3
5,182,225 + BWI76_RS24865 0.44 -0.6
5,182,226 - BWI76_RS24865 0.44 -0.8
5,182,235 - BWI76_RS24865 0.44 +2.6
5,182,240 + BWI76_RS24865 0.45 -0.0
5,182,248 - BWI76_RS24865 0.45 -0.5
5,182,259 + BWI76_RS24865 0.46 -0.4
5,182,312 - BWI76_RS24865 0.50 +0.1
5,182,349 + BWI76_RS24865 0.52 +0.6
5,182,350 + BWI76_RS24865 0.52 +0.6
5,182,358 - BWI76_RS24865 0.53 +3.6
5,182,410 + BWI76_RS24865 0.57 +0.1
5,182,464 - BWI76_RS24865 0.60 -0.4
5,182,464 - BWI76_RS24865 0.60 +2.6
5,182,505 + BWI76_RS24865 0.63 +2.1
5,182,506 - BWI76_RS24865 0.63 +0.8
5,182,513 - BWI76_RS24865 0.64 -1.0
5,182,625 - BWI76_RS24865 0.72 -0.5
5,182,688 + BWI76_RS24865 0.76 +0.3
5,182,751 + BWI76_RS24865 0.81 +0.3
5,182,756 + BWI76_RS24865 0.81 -0.4
5,182,861 - BWI76_RS24865 0.89 -2.0
5,182,905 + -0.3
5,182,951 + +0.9
5,182,969 - -0.2
5,183,051 - +0.4
5,183,116 + BWI76_RS24870 0.10 -0.8
5,183,124 - BWI76_RS24870 0.11 +1.6
5,183,363 + BWI76_RS24870 0.40 +0.6
5,183,364 + BWI76_RS24870 0.41 -0.7
5,183,372 - BWI76_RS24870 0.42 -0.0
5,183,389 + BWI76_RS24870 0.44 +0.4
5,183,423 + BWI76_RS24870 0.48 +0.2
5,183,489 + BWI76_RS24870 0.56 +0.6
5,183,514 + BWI76_RS24870 0.59 +0.4
5,183,538 + BWI76_RS24870 0.62 +3.4
5,183,670 + BWI76_RS24870 0.78 +1.3
5,183,954 + -0.1
5,183,962 - -1.2
5,183,962 - +1.6
5,183,962 - -0.3
5,184,138 + -0.2
5,184,150 + -0.3
5,184,266 + BWI76_RS24875 0.19 +1.5
5,184,295 - BWI76_RS24875 0.21 +2.6
5,184,400 + BWI76_RS24875 0.29 +0.7
5,184,410 + BWI76_RS24875 0.30 -0.1
5,184,510 - BWI76_RS24875 0.38 -0.2
5,184,588 - BWI76_RS24875 0.44 -0.4
5,184,658 + BWI76_RS24875 0.50 -0.1
5,184,708 - BWI76_RS24875 0.54 +0.6

Or see this region's nucleotide sequence