Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24770 and BWI76_RS24775 are separated by 323 nucleotides BWI76_RS24775 and BWI76_RS24780 are separated by 74 nucleotides BWI76_RS24780 and BWI76_RS24785 are separated by 126 nucleotides BWI76_RS24785 and BWI76_RS24790 are separated by 37 nucleotides
BWI76_RS24770: BWI76_RS24770 - hypothetical protein, at 5,164,261 to 5,164,560
_RS24770
BWI76_RS24775: BWI76_RS24775 - hypothetical protein, at 5,164,884 to 5,165,276
_RS24775
BWI76_RS24780: BWI76_RS24780 - glutathione-dependent reductase, at 5,165,351 to 5,166,337
_RS24780
BWI76_RS24785: BWI76_RS24785 - DUF805 domain-containing protein, at 5,166,464 to 5,166,832
_RS24785
BWI76_RS24790: BWI76_RS24790 - LysR family transcriptional regulator, at 5,166,870 to 5,167,766
_RS24790
Position (kb) 5165
5166
5167 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5164.366 kb on - strand, within BWI76_RS24770 at 5164.387 kb on + strand, within BWI76_RS24770 at 5164.514 kb on - strand, within BWI76_RS24770 at 5164.579 kb on + strand at 5164.582 kb on - strand at 5164.685 kb on + strand at 5164.785 kb on - strand at 5164.859 kb on + strand at 5164.940 kb on + strand, within BWI76_RS24775 at 5165.116 kb on + strand, within BWI76_RS24775 at 5165.124 kb on - strand, within BWI76_RS24775 at 5165.227 kb on - strand, within BWI76_RS24775 at 5165.279 kb on + strand at 5165.311 kb on + strand at 5165.493 kb on - strand, within BWI76_RS24780 at 5165.516 kb on + strand, within BWI76_RS24780 at 5165.538 kb on + strand, within BWI76_RS24780 at 5165.564 kb on - strand, within BWI76_RS24780 at 5165.571 kb on + strand, within BWI76_RS24780 at 5165.914 kb on - strand, within BWI76_RS24780 at 5165.925 kb on - strand, within BWI76_RS24780 at 5165.952 kb on + strand, within BWI76_RS24780 at 5166.053 kb on - strand, within BWI76_RS24780 at 5166.083 kb on + strand, within BWI76_RS24780 at 5166.084 kb on - strand, within BWI76_RS24780 at 5166.086 kb on - strand, within BWI76_RS24780 at 5166.188 kb on - strand, within BWI76_RS24780 at 5166.246 kb on + strand at 5166.326 kb on + strand at 5166.326 kb on + strand at 5166.461 kb on + strand at 5166.469 kb on - strand at 5166.552 kb on + strand, within BWI76_RS24785 at 5166.644 kb on - strand, within BWI76_RS24785 at 5166.674 kb on - strand, within BWI76_RS24785 at 5166.700 kb on + strand, within BWI76_RS24785 at 5166.707 kb on + strand, within BWI76_RS24785 at 5166.831 kb on + strand at 5166.921 kb on - strand at 5166.923 kb on + strand at 5166.923 kb on + strand at 5166.925 kb on + strand at 5166.977 kb on - strand, within BWI76_RS24790 at 5166.977 kb on - strand, within BWI76_RS24790 at 5166.982 kb on - strand, within BWI76_RS24790 at 5167.007 kb on - strand, within BWI76_RS24790 at 5167.014 kb on - strand, within BWI76_RS24790 at 5167.055 kb on - strand, within BWI76_RS24790 at 5167.096 kb on - strand, within BWI76_RS24790
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 5,164,366 - BWI76_RS24770 0.35 +0.4 5,164,387 + BWI76_RS24770 0.42 +2.8 5,164,514 - BWI76_RS24770 0.84 +0.4 5,164,579 + +0.5 5,164,582 - +3.9 5,164,685 + +0.8 5,164,785 - -0.2 5,164,859 + -1.0 5,164,940 + BWI76_RS24775 0.14 +0.1 5,165,116 + BWI76_RS24775 0.59 -0.3 5,165,124 - BWI76_RS24775 0.61 +0.2 5,165,227 - BWI76_RS24775 0.87 -0.6 5,165,279 + -0.9 5,165,311 + +0.2 5,165,493 - BWI76_RS24780 0.14 +0.7 5,165,516 + BWI76_RS24780 0.17 -0.4 5,165,538 + BWI76_RS24780 0.19 +0.3 5,165,564 - BWI76_RS24780 0.22 +1.0 5,165,571 + BWI76_RS24780 0.22 +0.6 5,165,914 - BWI76_RS24780 0.57 +0.8 5,165,925 - BWI76_RS24780 0.58 +0.1 5,165,952 + BWI76_RS24780 0.61 +0.6 5,166,053 - BWI76_RS24780 0.71 +0.5 5,166,083 + BWI76_RS24780 0.74 -2.1 5,166,084 - BWI76_RS24780 0.74 +0.3 5,166,086 - BWI76_RS24780 0.74 +0.2 5,166,188 - BWI76_RS24780 0.85 +2.4 5,166,246 + +0.5 5,166,326 + -0.0 5,166,326 + +0.8 5,166,461 + +2.6 5,166,469 - +0.2 5,166,552 + BWI76_RS24785 0.24 +2.0 5,166,644 - BWI76_RS24785 0.49 +0.5 5,166,674 - BWI76_RS24785 0.57 +0.9 5,166,700 + BWI76_RS24785 0.64 +1.5 5,166,707 + BWI76_RS24785 0.66 +0.4 5,166,831 + +0.1 5,166,921 - +0.4 5,166,923 + -0.7 5,166,923 + -0.1 5,166,925 + -0.4 5,166,977 - BWI76_RS24790 0.12 +1.1 5,166,977 - BWI76_RS24790 0.12 +1.0 5,166,982 - BWI76_RS24790 0.12 -0.4 5,167,007 - BWI76_RS24790 0.15 -0.1 5,167,014 - BWI76_RS24790 0.16 -0.7 5,167,055 - BWI76_RS24790 0.21 -0.2 5,167,096 - BWI76_RS24790 0.25 -1.2
Or see this region's nucleotide sequence