Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24000 and BWI76_RS24005 overlap by 13 nucleotides BWI76_RS24005 and BWI76_RS24010 overlap by 7 nucleotides BWI76_RS24010 and BWI76_RS24015 are separated by 154 nucleotides
BWI76_RS24000: BWI76_RS24000 - hypothetical protein, at 5,008,889 to 5,009,596
_RS24000
BWI76_RS24005: BWI76_RS24005 - cobalt ABC transporter ATP-binding protein, at 5,009,584 to 5,010,261
_RS24005
BWI76_RS24010: BWI76_RS24010 - hypothetical protein, at 5,010,255 to 5,010,911
_RS24010
BWI76_RS24015: BWI76_RS24015 - transketolase, at 5,011,066 to 5,013,057
_RS24015
Position (kb) 5010
5011 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5009.284 kb on + strand, within BWI76_RS24000 at 5009.310 kb on - strand, within BWI76_RS24000 at 5009.415 kb on + strand, within BWI76_RS24000 at 5009.525 kb on - strand, within BWI76_RS24000 at 5009.528 kb on - strand at 5009.591 kb on + strand at 5009.591 kb on + strand at 5009.721 kb on + strand, within BWI76_RS24005 at 5009.729 kb on - strand, within BWI76_RS24005 at 5009.828 kb on - strand, within BWI76_RS24005 at 5009.828 kb on - strand, within BWI76_RS24005 at 5010.063 kb on + strand, within BWI76_RS24005 at 5010.119 kb on - strand, within BWI76_RS24005 at 5010.119 kb on - strand, within BWI76_RS24005 at 5010.167 kb on + strand, within BWI76_RS24005 at 5010.346 kb on + strand, within BWI76_RS24010 at 5010.422 kb on + strand, within BWI76_RS24010 at 5010.430 kb on - strand at 5010.759 kb on - strand, within BWI76_RS24010 at 5010.844 kb on - strand, within BWI76_RS24010 at 5011.064 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 5,009,284 + BWI76_RS24000 0.56 +0.6 5,009,310 - BWI76_RS24000 0.59 +0.3 5,009,415 + BWI76_RS24000 0.74 -0.8 5,009,525 - BWI76_RS24000 0.90 -0.9 5,009,528 - -0.6 5,009,591 + +0.5 5,009,591 + +0.8 5,009,721 + BWI76_RS24005 0.20 +1.5 5,009,729 - BWI76_RS24005 0.21 +0.2 5,009,828 - BWI76_RS24005 0.36 +0.0 5,009,828 - BWI76_RS24005 0.36 +4.1 5,010,063 + BWI76_RS24005 0.71 -0.1 5,010,119 - BWI76_RS24005 0.79 -0.1 5,010,119 - BWI76_RS24005 0.79 +0.9 5,010,167 + BWI76_RS24005 0.86 +1.5 5,010,346 + BWI76_RS24010 0.14 +0.0 5,010,422 + BWI76_RS24010 0.25 -0.8 5,010,430 - +0.5 5,010,759 - BWI76_RS24010 0.77 +0.1 5,010,844 - BWI76_RS24010 0.90 -1.1 5,011,064 + -0.3
Or see this region's nucleotide sequence