Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20850 and BWI76_RS20855 are separated by 186 nucleotides BWI76_RS20855 and BWI76_RS20860 are separated by 5 nucleotides
BWI76_RS20850: BWI76_RS20850 - oxidoreductase FeS-binding subunit, at 4,357,835 to 4,359,799
_RS20850
BWI76_RS20855: BWI76_RS20855 - hypothetical protein, at 4,359,986 to 4,360,166
_RS20855
BWI76_RS20860: BWI76_RS20860 - aminoglycoside/multidrug transporter subunit AcrD, at 4,360,172 to 4,363,285
_RS20860
Position (kb)
4359
4360
4361 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 4359.006 kb on + strand, within BWI76_RS20850 at 4359.093 kb on + strand, within BWI76_RS20850 at 4359.150 kb on + strand, within BWI76_RS20850 at 4359.155 kb on + strand, within BWI76_RS20850 at 4359.321 kb on + strand, within BWI76_RS20850 at 4359.350 kb on - strand, within BWI76_RS20850 at 4359.636 kb on - strand at 4359.668 kb on - strand at 4359.670 kb on + strand at 4359.742 kb on + strand at 4359.983 kb on + strand at 4360.001 kb on + strand at 4360.009 kb on - strand, within BWI76_RS20855 at 4360.011 kb on + strand, within BWI76_RS20855 at 4360.013 kb on + strand, within BWI76_RS20855 at 4360.025 kb on + strand, within BWI76_RS20855 at 4360.033 kb on + strand, within BWI76_RS20855 at 4360.098 kb on + strand, within BWI76_RS20855 at 4360.100 kb on - strand, within BWI76_RS20855 at 4360.106 kb on - strand, within BWI76_RS20855 at 4360.106 kb on - strand, within BWI76_RS20855 at 4360.118 kb on + strand, within BWI76_RS20855 at 4360.120 kb on + strand, within BWI76_RS20855 at 4360.120 kb on + strand, within BWI76_RS20855 at 4360.120 kb on + strand, within BWI76_RS20855 at 4360.128 kb on - strand, within BWI76_RS20855 at 4360.235 kb on + strand at 4360.275 kb on + strand at 4360.367 kb on + strand at 4360.372 kb on + strand at 4360.417 kb on - strand at 4360.471 kb on + strand at 4360.525 kb on + strand, within BWI76_RS20860 at 4360.583 kb on - strand, within BWI76_RS20860 at 4360.707 kb on - strand, within BWI76_RS20860 at 4360.747 kb on + strand, within BWI76_RS20860 at 4360.825 kb on + strand at 4360.909 kb on - strand, within BWI76_RS20860 at 4360.963 kb on + strand, within BWI76_RS20860 at 4360.981 kb on - strand, within BWI76_RS20860 at 4361.048 kb on - strand, within BWI76_RS20860 at 4361.119 kb on - strand, within BWI76_RS20860
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 4,359,006 + BWI76_RS20850 0.60 -0.3 4,359,093 + BWI76_RS20850 0.64 -0.1 4,359,150 + BWI76_RS20850 0.67 -0.4 4,359,155 + BWI76_RS20850 0.67 +0.3 4,359,321 + BWI76_RS20850 0.76 -2.9 4,359,350 - BWI76_RS20850 0.77 +0.7 4,359,636 - -1.9 4,359,668 - +0.8 4,359,670 + +1.6 4,359,742 + +1.0 4,359,983 + +0.2 4,360,001 + -0.6 4,360,009 - BWI76_RS20855 0.13 -0.1 4,360,011 + BWI76_RS20855 0.14 +0.6 4,360,013 + BWI76_RS20855 0.15 -1.8 4,360,025 + BWI76_RS20855 0.22 +0.8 4,360,033 + BWI76_RS20855 0.26 -0.1 4,360,098 + BWI76_RS20855 0.62 +0.0 4,360,100 - BWI76_RS20855 0.63 +0.4 4,360,106 - BWI76_RS20855 0.66 -0.3 4,360,106 - BWI76_RS20855 0.66 +0.6 4,360,118 + BWI76_RS20855 0.73 -0.2 4,360,120 + BWI76_RS20855 0.74 -0.8 4,360,120 + BWI76_RS20855 0.74 +0.6 4,360,120 + BWI76_RS20855 0.74 +9.5 4,360,128 - BWI76_RS20855 0.78 +0.4 4,360,235 + -0.8 4,360,275 + +0.8 4,360,367 + +0.5 4,360,372 + +1.0 4,360,417 - -1.2 4,360,471 + -0.0 4,360,525 + BWI76_RS20860 0.11 +0.4 4,360,583 - BWI76_RS20860 0.13 -0.9 4,360,707 - BWI76_RS20860 0.17 +0.9 4,360,747 + BWI76_RS20860 0.18 -0.9 4,360,825 + +1.4 4,360,909 - BWI76_RS20860 0.24 -0.7 4,360,963 + BWI76_RS20860 0.25 +0.6 4,360,981 - BWI76_RS20860 0.26 -0.2 4,361,048 - BWI76_RS20860 0.28 +0.2 4,361,119 - BWI76_RS20860 0.30 -1.4
Or see this region's nucleotide sequence