Experiment: RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19395 and BWI76_RS19400 are separated by 2 nucleotides BWI76_RS19400 and BWI76_RS19405 are separated by 155 nucleotides
BWI76_RS19395: BWI76_RS19395 - adenine deaminase, at 4,044,814 to 4,046,625
_RS19395
BWI76_RS19400: BWI76_RS19400 - NCS2 family permease, at 4,046,628 to 4,047,971
_RS19400
BWI76_RS19405: BWI76_RS19405 - LysR family transcriptional regulator, at 4,048,127 to 4,049,047
_RS19405
Position (kb)
4046
4047
4048 Strain fitness (log2 ratio)
-1
0
1
2 at 4045.695 kb on + strand, within BWI76_RS19395 at 4045.879 kb on - strand, within BWI76_RS19395 at 4045.928 kb on + strand, within BWI76_RS19395 at 4046.039 kb on + strand, within BWI76_RS19395 at 4046.100 kb on - strand, within BWI76_RS19395 at 4046.116 kb on - strand, within BWI76_RS19395 at 4046.118 kb on + strand, within BWI76_RS19395 at 4046.369 kb on + strand, within BWI76_RS19395 at 4046.485 kb on + strand at 4046.829 kb on + strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.837 kb on - strand, within BWI76_RS19400 at 4046.913 kb on + strand, within BWI76_RS19400 at 4046.921 kb on - strand, within BWI76_RS19400 at 4047.126 kb on + strand, within BWI76_RS19400 at 4047.268 kb on + strand, within BWI76_RS19400 at 4047.306 kb on - strand, within BWI76_RS19400 at 4047.447 kb on + strand, within BWI76_RS19400 at 4047.681 kb on + strand, within BWI76_RS19400 at 4047.730 kb on + strand, within BWI76_RS19400 at 4047.755 kb on - strand, within BWI76_RS19400 at 4047.816 kb on - strand, within BWI76_RS19400 at 4047.862 kb on + strand at 4047.973 kb on - strand at 4048.109 kb on - strand at 4048.185 kb on + strand at 4048.361 kb on + strand, within BWI76_RS19405 at 4048.520 kb on + strand, within BWI76_RS19405 at 4048.842 kb on + strand, within BWI76_RS19405
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL remove 4,045,695 + BWI76_RS19395 0.49 +0.4 4,045,879 - BWI76_RS19395 0.59 +0.2 4,045,928 + BWI76_RS19395 0.61 +0.7 4,046,039 + BWI76_RS19395 0.68 -1.4 4,046,100 - BWI76_RS19395 0.71 -0.2 4,046,116 - BWI76_RS19395 0.72 +0.2 4,046,118 + BWI76_RS19395 0.72 -0.8 4,046,369 + BWI76_RS19395 0.86 -0.1 4,046,485 + -0.1 4,046,829 + BWI76_RS19400 0.15 +2.3 4,046,837 - BWI76_RS19400 0.16 -0.9 4,046,837 - BWI76_RS19400 0.16 +2.4 4,046,837 - BWI76_RS19400 0.16 -0.2 4,046,913 + BWI76_RS19400 0.21 +0.8 4,046,921 - BWI76_RS19400 0.22 -0.9 4,047,126 + BWI76_RS19400 0.37 -1.0 4,047,268 + BWI76_RS19400 0.48 -1.2 4,047,306 - BWI76_RS19400 0.50 +1.0 4,047,447 + BWI76_RS19400 0.61 +1.4 4,047,681 + BWI76_RS19400 0.78 +0.8 4,047,730 + BWI76_RS19400 0.82 -0.2 4,047,755 - BWI76_RS19400 0.84 +1.0 4,047,816 - BWI76_RS19400 0.88 -1.2 4,047,862 + -0.5 4,047,973 - +0.9 4,048,109 - -0.6 4,048,185 + -1.4 4,048,361 + BWI76_RS19405 0.25 -0.2 4,048,520 + BWI76_RS19405 0.43 +0.5 4,048,842 + BWI76_RS19405 0.78 -0.1
Or see this region's nucleotide sequence